Jun Luo,² David J. Duggan,² Yidong Chen, Jurga Sauvageot, Charles Ewing, Michael Bittner, Jeffrey M. Trent, and William B. Isaacs³

Brady Urological Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287-2101 [J. L., J.S., C.E., W.B.I.]; and Cancer Genetics Branch, National Human Genome Research Institute, Bethesda, MD 20892-4470 [D.J.D., Y.C., M.B., J.M.T.]

¹ Supported by Public Health Service SPORE CA 58236 and DK 52675.
² These authors participated equally.
³ To whom requests for reprints should be addressed, at 115 Marburg, 600 N. Wolfe Street, Johns Hopkins Hospital, Baltimore, MD 21287. Phone: (410) 955-2518; Fax: (410) 955-0833; E-mail: sisaacs@jhmi.edu.

I.

EXPERIMENTAL DESIGN AND DATA ANALYSIS OVERVIEW. FIGURE 1.JPG

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Complete List of 6500 Human cDNAs, Calibrated Ratios, and Quality Scores. Download Spreadsheet.

Details of Prostate Tissue Sample. View PDF.

II.

MULTIDIMENSIONAL SCALING AND WEIGHTED GENE ANALYSIS. FIGURE 2.JPG

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3-dimensional animation of MDS plot Figure 2A. View QuickTime Animation.

Filtered Gene List. View PDF.

Observed versus Random Sample Permutation Analysis Table. View PDF.

Top 210 Discriminating Genes Ranked by w Values. View PDF.

3-dimensional animation of MDS plot Figure 2C. View QuickTime Animation.

Details of Quality Metric Analysis. View PDF.

III.

HIERARCHICAL CLUSTERING ANALYSIS, GENE DENDROGRAM ANALYSIS. FIGURE 3.JPG

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Dendrogram of Top 210 Discriminating Genes. View PDF.

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VERIFICATION OF DIFFERENTIAL HEPSIN GENE EXPRESSION. FIGURE 4.JPG

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RELATED WEBSITES

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NHGRI cDNA Microarray Website: http://www.nhgri.nih.gov/DIR/microarray

Supplementary information for Hedenfalk, et. al, New England Journal of Medicine, 244:539-548. (2001)