Table 2d. A list of all significantly changed genes in ZR-75-1-wt.
CloneID	Cal. Ratio	Cell Line Int.	Refer. Int.	Description
198205	5.713	13414.5	852.3	B-myb
49950	4.909	23474.0	1735.6	rad2 = Homologue of yeast DNA repair gene
48398	4.272	19902.7	1690.9	cdc25B
34647	3.768	24402.5	2350.7	Human mRNA for Nm23 protein, involved in developmental regulation (ho
48085	3.740	18699.0	1814.7	H. sapiens ERF-1 mRNA 5' end
248032	3.402	3492.2	372.6	Topoisomerase II
28116	3.312	13418.5	1470.4	Human Rch1 (RCH1) mRNA, complete cds
39903	3.190	14364.5	1634.5	Human (HepG2) glucose transporter gene mRNA, complete cds
267682	2.984	9165.6	1114.8	hPAK65 =  serine kinase homologue of rat PAK65
243159	2.895	17962.9	2252.4	NAIP
366647	2.707	15695.6	2104.4	ERF-1 = BERG36
37366	2.673	47117.3	6396.8	Human mRNA fragment encoding beta-tubulin. (from clone D-beta-1)
40874	2.666	37706.3	5133.3	Human gamma-tubulin mRNA, complete cds
51018	0.379	4156.8	3976.0	Human lipocortin II mRNA, complete cds
39159	0.376	4586.8	4424.2	Homo sapiens phosphoglycerate mutase (PGAM-B) mRNA, complete cds
30573	0.374	1273.1	1236.7	Homo sapiens galactocerebrosidase (GALC) gene
417592	0.374	1012.5	981.8	MRP = MDR-associated protein
50203	0.373	3392.9	3304.6	Human mRNA for calretinin
30149	0.370	13763.3	13491.4	Human mRNA for liver-type alkaline phosphatase (EC 3.1.3.1)
427857	0.367	3211.3	3177.8	Cyclin A
24392	0.363	7261.3	7254.5	Human HLA-B-associated transcript 3 (BAT3) gene, 5' end
26789	0.363	8641.3	8637.5	Human laminin B2 chain mRNA, complete cds
469272	0.363	1987.1	1987.2	EGF Receptor
306013	0.362	6378.2	6401.4	CD20 p35 subunit = B1
23731	0.358	2065.2	2091.0	Human peptidylglycine alpha-amidating monooxygenase mRNA, complete cds
328692	0.358	3401.4	3452.8	IL-8
376218	0.356	1921.3	1960.3	Probable transcription factor PML {alternative products}
38647	0.353	8882.4	9142.1	Human placental calpastatin mRNA, partial cds
114648	0.352	1470.3	1514.1	NFkB1 = NF-kappaB p105
323776	0.352	5586.4	5760.1	bFGF  = basic FGF = FGF-2
24638	0.350	3530.6	3664.3	Human ras-related protein (Krev-1) mRNA, complete cds
362926	0.350	2624.1	2717.4	PKA-C beta = protein kinase A catalytic subunit, beta isoform
24642	0.349	5656.0	5877.2	Human phosphodiesterase I alpha mRNA
268652	0.349	1497.8	1558.7	p21 cyclin kinase inhibitor
380403	0.348	13855.5	14449.2	rhoA
25764	0.347	5502.5	5752.6	Human angiotensinogen (AGT) gene
50363	0.346	7921.4	8305.0	Human nonerythroid alpha-spectrin (SPTAN1) mRNA, complete cds
37485	0.345	2092.7	2202.0	Human mRNA for carboxypeptidase E (EC 3.4.17.10)
40205	0.342	5214.6	5532.2	Human cathepsin B proteinase mRNA, complete cds
49584	0.340	1245.4	1331.0	H.sapiens (HepG2) LAL mRNA for lysosomal acid lipase
201673	0.340	1201.4	1283.0	IRF-2
415102	0.336	3503.7	3789.4	cdc25Hs = cdc25c = M-PHASE INDUCER PHOSPHATASE 3
26286	0.333	4024.5	4380.1	Human macrophage mannose receptor (MRC1) gene
306134	0.333	949.2	1035.0	KKIALRE = novel cdk
24886	0.332	2055.2	2243.7	Human mRNA for MTG8 protein, complete cds
41356	0.331	6078.8	6656.7	Homo sapiens protein phosphatase 2A B56-alpha mRNA, complete cds
43858	0.331	2413.8	2649.2	H.sapiens mRNA for receptor protein tyrosine kinase
26052	0.326	15896.0	17673.1	Human glutathione S-transferase mRNA, complete cds
138998	0.325	1003.6	1121.2	Homologue of seven in absentia
512429	0.323	50587.2	56905.2	IGFBP-2
193901	0.321	1664.4	1880.8	Cell cycle, G1 phase defect, (transcription factor TFIID p250 polypeptide)
52415	0.320	1030.2	1167.6	Human gene for C1-inhibitor
44050	0.317	4933.7	5642.9	H.sapiens MLN50 mRNA
44584	0.317	5738.0	6568.1	Human RIG mRNA, complete sequence
33183	0.316	14358.0	16490.9	Human mRNA for ribophorin II
110022	0.315	1598.9	1839.7	Cyclin D1 = BCL1 = PRAD1
345928	0.315	1803.1	2077.5	Smad1= Sma and Mad homologue
259291	0.314	5367.5	6200.5	INTEGRIN BETA-5
271478	0.314	1773.3	2049.9	MXI-1
31242	0.311	2024.3	2363.8	Human mRNA for protein phosphatase 2A (beta-type)
470792	0.310	1896.7	2219.7	TRANSCRIPTION INITIATION FACTOR IIB
40764	0.309	9911.4	11661.1	Human AD amyloid mRNA, complete cds
124086	0.309	1420.5	1666.6	IL-11 Receptor
47306	0.308	3306.9	3895.7	Human mRNA for protein kinase C delta-type
266486	0.304	903.2	1077.1	cdk2
347573	0.303	2027.0	2426.9	Transcription factor COUP 2 (a.k.a. ARP1)
33943	0.301	2506.0	3021.1	Human beta-galactosidase (GLB1) mRNA, complete cds
187987	0.301	1270.5	1531.8	IL-4 receptor alpha chain
158970	0.300	887.4	1073.6	HEK2
362009	0.300	2583.3	3129.6	GADD153 =g rowth arrest and DNA-damage-inducible gene
253773	0.299	1184.6	1436.3	IAP2 = MIHB
488801	0.296	1354.1	1657.7	HBNF-1
34327	0.291	36573.8	45604.1	Human cellular oncogene c-fos (complete sequence)
32750	0.289	6770.7	8508.5	H.sapiens serum paraoxonase (PON) mRNA, complete cds
199381	0.288	1299.7	1640.0	VAV
256323	0.287	16658.7	21054.0	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 3
39169	0.285	17415.8	22160.5	Human 26-kDa cell surface protein TAPA-1 mRNA, complete cds
50999	0.284	2753.6	3521.7	Human aldehyde dehydrogenase 1 mRNA
375724	0.284	19540.3	24976.9	CAMP-dependent transcription factor ATF-4 (CREB2)
361381	0.283	1762.6	2260.8	MCL1
115336	0.280	2147.3	2782.2	beta-galactoside alpha-2,6-sialyltransferase =  CD75 = CDw75
50555	0.279	26398.3	34299.3	H.sapiens mRNA for ribosomal protein L3
162584	0.279	1932.7	2513.2	B-lymphocyte antigen precursor = XE7
154763	0.277	1438.9	1883.7	Probable transcription factor PML {alternative products}
39796	0.276	3167.3	4172.2	Human hydroxymethylglutaryl-CoA lyase mRNA, complete cds
375724	0.276	23368.8	30759.8	ATF-4 = TAXREB67 = CREB2?
44178	0.272	6166.9	8225.8	H.sapiens TEGT gene
28774	0.271	1208.4	1616.4	HPTP delta = protein tyrosine phosphatase delta
343166	0.268	4938.5	6683.2	PSSALRE = cdk5
34761	0.267	8436.2	11484.1	Human mRNA (KIAA0026) for ORF (complete cds) and HepG2 mRNA identical
41208	0.267	2145.2	2913.4	Homo sapiens (clone KT2) bone morphogenetic protein-1 (BMP-1) mRNA and alternatively spliced mammal
31355	0.265	2231.9	3053.1	H.sapiens Id1 mRNA
158970	0.265	803.6	1099.1	HEK2
46777	0.264	24885.3	34159.1	Human scar protein mRNA, complete cds
361815	0.262	2958.1	4100.3	ESTs, Highly  similar to TRANSCRIPTIONAL ACTIVATOR FE65 [Rattus norvegicus]
26871	0.261	1626.9	2258.4	Fibroblast growth factor receptor 2
428404	0.261	1135.5	1579.1	PIM
487417	0.261	2507.0	3488.6	ERK
418138	0.258	2065.1	2906.6	shp = sh-ptp1 = ptp1c = hcp
32684	0.257	8971.9	12652.1	Human mRNA for ribosomal protein L32
25485	0.254	1224.2	1749.5	Homo sapiens neuroendocrine-specific protein A (NSP) mRNA, complete cds
221619	0.254	891.3	1274.8	MHC Class II = DQ alpha
49243	0.253	5149.3	7380.2	Human mRNA for Diff6, H5, CDC10 homologue
509882	0.250	1488.3	2164.2	H.sapiens MTF-1 mRNA for metal-regulatory transcription factor
484993	0.249	16571.8	24108.3	CD81 ANTIGEN
487965	0.249	2292.8	3347.3	HHR6A = rad6 homologue
213502	0.248	2243.9	3289.9	Leukocyte Antigen CD53
43711	0.246	10435.5	15417.4	Human steroid 5-alpha-reductase mRNA, complete cds
357909	0.246	1840.5	2718.3	Receptor PTP mu = hR-PTPu
417218	0.244	1014.8	1511.1	RETINOIC ACID REC RXR-ALPHA
241489	0.238	11562.6	17608.3	BETA-2 ADRENERGIC RECEPTOR
41452	0.236	5346.0	8225.4	Spermidine/spermine N1-acetyltransferase mRNA, complete cds
327396	0.235	6534.1	10079.6	PITSLRE alpha 1
310141	0.234	1349.4	2089.0	gadd45 (growth arrest &DNA Damage inducible protein)
37230	0.232	2768.0	4327.3	Human protective protein mRNA, complete cds
37796	0.232	950.5	1486.1	Human DNA for osteopontin, complete cds
195889	0.231	1607.3	2529.3	ESTs, Highly  similar to TRANSCRIPTION FACTOR BTF3 [Homo sapiens]
347751	0.230	877.3	1384.1	FGR
41094	0.229	3149.6	4998.2	Human tie mRNA for putative receptor tyrosine kinase
44311	0.229	4006.7	6340.3	H.sapiens MGF gene exons 1&2
51219	0.229	3350.1	5309.3	Human mRNA for MGC-24, complete cds
196543	0.223	743.1	1211.1	STAT4
24652	0.222	1688.8	2761.0	Human CD34 mRNA, complete cds
380738	0.222	2367.3	3864.8	TRANSCRIPTION FACTOR ITF-2
417403	0.222	1929.6	3152.9	raf-b = B-raf
291057	0.215	1341.1	2266.3	p18 (cdk6 inhibitor)
239287	0.214	609.1	1034.0	CD45
52162	0.210	4488.2	7744.6	Elongin B = SIII p18 subunit
34005	0.209	3168.3	5511.8	Human clone pSK1 interferon gamma receptor accessory factor-1 (AF-1)
51363	0.207	690.2	1211.1	MRC OX-2
22589	0.205	2174.9	3852.2	Human retinoic acid-inducible E3 protein mRNA, complete cds
23185	0.204	1315.8	2336.0	Homo sapiens hexabrachion mRNA, complete cds
41813	0.203	2621.4	4680.3	Human glucose transporter-like protein-III (GLUT3), complete cds
299539	0.199	2040.0	3722.5	FHF-1 = fibroblast growth factor homologous factor 1
126519	0.198	836.2	1529.6	ESTs, Moderately  similar to ERYTHROID KRUEPPEL-LIKE TRANSCRIPTION FACTOR [Mus musculus]
30012	0.197	9498.8	17537.3	H.sapiens mRNA for high endothelial venule
49691	0.197	1905.9	3515.4	Human prion protein mRNA, human PrP 27-30 mRNA, complete cds
488092	0.197	1446.9	2670.3	ESTs, Highly  similar to TRANSCRIPTIONAL ACTIVATOR GCN5 [Saccharomyces cerevisiae]
357357	0.195	1306.2	2435.4	MITOCHONDRIAL TRANSCRIPTION FACTOR 1 PRECURSOR
366981	0.195	728.0	1352.8	Human transcription factor LSF mRNA, complete cds
471620	0.194	6174.9	11555.5	CD105 = endoglin
72869	0.193	682.5	1286.7	beta-NGF
298187	0.193	1366.6	2571.2	Bcl-xs
366420	0.191	3425.0	6511.6	MKK6 = mek6
114116	0.184	5373.8	10594.9	Syndecan-2 = heparin sulfate proteoglycan core protein
486785	0.184	847.2	1675.4	plasminogen gene
295389	0.183	564.7	1121.3	GHR Receptor
36560	0.181	1266.4	2544.9	Human amyloid protein (AD-AP) mRNA, 3' end
183950	0.181	1399.1	2798.1	Thy-1
364278	0.181	2310.6	4630.2	c-maf = NRL
38983	0.180	2191.7	4414.4	Human placental FXIIIa mRNA, complete cds
359412	0.180	1130.2	2277.0	Cyclin D2
47884	0.177	593.8	1214.3	Homo sapiens macrophage migration inhibitory factor mRNA, 3' end
44722	0.175	4212.4	8761.6	H.sapiens mRNA for transcript associated with monocyte to macrophage differentiation
49164	0.170	741.1	1584.6	CD106 = VCAM-1
32658	0.169	16310.5	35095.7	Human apolipoprotein J mRNA, complete cds
470062	0.169	799.5	1720.0	DNA ligase III
47386	0.167	1564.0	3391.6	Human alpha-1-antichymotrypsin mRNA, 3' end
22285	0.164	1937.2	4282.1	Human mRNA for erythrocyte band 7 integral membrane protein
297589	0.160	1104.8	2509.9	AIM1
357807	0.160	539.1	1225.8	Cyclin E
77577	0.158	1557.1	3571.3	fra-2
236420	0.158	615.1	1414.4	receptor protein tyrosine kin
299198	0.156	521.1	1209.4	CD1E
34005	0.155	2984.1	7002.9	Interferon gamma receptor beta chain
53184	0.150	426.4	1034.0	Human transcobalamin II (TCII) mRNA, complete cds
22012	0.149	2159.6	5273.3	Human ADP-ribosylation factor (ARF3) mRNA, complete cds
147744	0.148	933.7	2292.8	p57KIP2
27681	0.147	1187.0	2940.3	Human smooth muscle cell calponin mRNA, complete cds
310406	0.147	3804.2	9408.2	IL-6
26593	0.146	2964.3	7348.1	Human complement C1r mRNA, complete cds
323162	0.146	4081.4	10120.7	cdk3
262691	0.144	730.8	1838.8	GLUCOCORTICOID RECEPTOR, B
26572	0.143	4424.0	11268.1	Human myristoylated alanine-rich C-kinase substrate mRNA, complete cds
489395	0.143	722.3	1835.8	Alpha PDGF Receptor
50032	0.141	1464.1	3781.2	Human interferon-gamma receptor mRNA, complete cds
154472	0.141	901.1	2314.2	Fibroblast growth factor receptor 1
486074	0.140	1057.4	2742.0	MEK1
49725	0.138	529.2	1392.1	H.sapiens mRNA for neuropeptide Y-like receptor
22445	0.137	2243.7	5953.2	Human cytochrome b561 gene
359077	0.137	549.5	1451.3	Fibronectin Recpt Alpha
51854	0.136	711.4	1892.2	FLI-1 = ERGB
124927	0.136	1793.6	4802.7	ESTs, Highly  similar to BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT [Homo sapiens]
125555	0.133	1082.7	2965.5	ESTs, Highly  similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4 [Homo sapiens]
22379	0.131	4080.6	11273.3	Human lymphocytic antigen CD59/MEM43 mRNA, complete cds
485690	0.130	9001.3	25130.3	MYOSIN HEAVY CHAIN
22589	0.128	2095.6	5942.2	Human mRNA (KIAA0085) for ORF (novel protein), partial cds
360531	0.127	1090.7	3123.8	raf-a = pks = a-raf
471889	0.126	852.0	2450.4	COUP TRANSCRIPTION FACTOR
32409	0.124	1708.2	5011.1	Human mRNA (HA1756) for ORF, complete cds
47679	0.122	1542.1	4597.0	Human monocyte antigen CD14 (CD14) mRNA, complete cds
86017	0.119	749.1	2291.6	CD54 = ICAM-1
309477	0.119	8524.8	25978.4	jun-B
365647	0.117	5293.9	16400.0	CD4
428248	0.117	1611.4	5004.5	ATF-3 = activating transcription factor 3
238577	0.115	550.8	1733.3	MHC Class II = DP beta
343311	0.115	329.2	1035.5	NGF Receptor
132420	0.114	522.1	1656.3	ets-2
183661	0.114	484.5	1541.3	T.P.K Receptor  TIE-2
282065	0.111	679.8	2226.8	ESTs, Highly  similar to TRANSCRIPTIONAL ACTIVATOR FE65 [Rattus norvegicus]
346396	0.107	562.7	1915.5	R-RAS
288650	0.104	709.0	2477.7	ESTs, Highly  similar to SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 3 [Mus musculus]
376303	0.103	361.9	1275.6	IGF-IA
510381	0.103	1404.7	4953.3	ESTs, Highly  similar to ERYTHROID KRUEPPEL-LIKE TRANSCRIPTION FACTOR [Mus musculus]
25400	0.101	2620.9	9381.2	Human transcription factor (ITF-2) mRNA, 3' end