| Table 2a. A list of all significantly changed genes in MCF-7. | ||||
| CloneID | Cal. Ratio | Cell Line Int. | Refer. Int. | Description |
| 40911 | 6.061 | 45951.8 | 10749; | Human histone (H2A.Z) mRNA, complete cds |
| 429142 | 5.786 | 4218.1 | 1033.7 | PKA-C alpha = protein kinase A catalytic subunit, alpha isoform |
| 198205 | 5.599 | 12158 | 3078.9 | B-myb |
| 248032 | 5.363 | 12477.6 | 3299 | Topoisomerase II |
| 135118 | 5.288 | 42173 | 11308.2 | TRANS-ACTING T-CELL SPECIFIC TRANSCRIPTION FACTOR GATA-3 |
| 28116 | 5.143 | 18330.8 | 5053.8 | Human Rch1 (RCH1) mRNA, complete cds |
| 286197 | 4.992 | 2152.8 | 611.5 | PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-3 |
| 243159 | 3.939 | 31282.9 | 11260.9 | NAIP |
| 52342 | 3.683 | 20133.7 | 7750 | Human lamin B2 (LAMB2) mRNA, partial cds |
| 53238 | 3.349 | 33392.3 | 14138.3 | Homo sapiens (clone S31i125) mRNA, 3' end of cds |
| 40886 | 3.318 | 33497.4 | 14315 | Homo sapiens dbpB-like protein mRNA, complete cds |
| 486199 | 3.203 | 11474 | 5079.6 | General transcription factor IIIA |
| 34349 | 3.132 | 44020.8 | 19930.7 | Human non-histone chromosomal protein HMG-14 mRNA, complete cds |
| 509710 | 3.059 | 17626 | 8168.3 | Estrogen Receptor |
| 40959 | 2.744 | 40633.1 | 20994.7 | Human adenine nucleotide translocator-2 (ANT-2) gene, complete cds |
| 221690 | 2.744 | 11883.8 | 6141.1 | Homologue of RP-8 |
| 24652 | 0.365 | 2617.4 | 10170.4 | Human CD34 mRNA, complete cds |
| 41094 | 0.365 | 3273.3 | 12707 | Human tie mRNA for putative receptor tyrosine kinase |
| 38983 | 0.364 | 3562.6 | 13894.2 | Human placental FXIIIa mRNA, complete cds |
| 298187 | 0.361 | 2065.6 | 8115.5 | Bcl-xs |
| 154420 | 0.36 | 2152.6 | 8488.4 | PDGF receptor beta-like |
| 284031 | 0.36 | 773.3 | 3042.8 | N-ras |
| 36191 | 0.357 | 10761.1 | 42720.5 | Human mRNA for fibronectin (FN precursor) |
| 377275 | 0.357 | 2036.1 | 8083.4 | AT Group D |
| 72869 | 0.356 | 2093.5 | 8344.8 | beta-NGF |
| 488801 | 0.356 | 2443.9 | 9733.6 | HBNF-1 |
| 417226 | 0.354 | 9409.5 | 37706.9 | c-myc |
| 23173 | 0.352 | 1384.9 | 5576.3 | MAP kinase |
| 484993 | 0.35 | 2877.9 | 11650.6 | CD81 ANTIGEN |
| 489419 | 0.347 | 3257.2 | 13300.3 | PAX-3/FKHR |
| 470792 | 0.345 | 3549.4 | 14574.1 | TRANSCRIPTION INITIATION FACTOR IIB |
| 470602 | 0.341 | 2502.2 | 10413.6 | STEROID HOR RECEPTOR ERR1 |
| 41356 | 0.337 | 3971.6 | 16684.5 | Homo sapiens protein phosphatase 2A B56-alpha mRNA, complete cds |
| 299198 | 0.336 | 2582.9 | 10905.2 | CD1E |
| 22012 | 0.331 | 1874 | 8037.7 | Human ADP-ribosylation factor (ARF3) mRNA, complete cds |
| 47679 | 0.327 | 3514 | 15238.3 | Human monocyte antigen CD14 (CD14) mRNA, complete cds |
| 86017 | 0.327 | 1594.8 | 6906.6 | CD54 = ICAM-1 |
| 144944 | 0.327 | 2337.1 | 10120.2 | LESTR = 7 transmembrane receptor |
| 299539 | 0.323 | 5200 | 22825.4 | FHF-1 = fibroblast growth factor homologous factor 1 |
| 43858 | 0.322 | 4474.5 | 19724.3 | H.sapiens mRNA for receptor protein tyrosine kinase |
| 296642 | 0.322 | 1924.5 | 8465.6 | IGF IB |
| 73515 | 0.314 | 1551.3 | 7015.6 | mic-B |
| 254187 | 0.313 | 1262.7 | 5714.1 | CADHERIN 5 |
| 284669 | 0.313 | 1702.6 | 7706.4 | FLI-1 |
| 50503 | 0.311 | 3235.7 | 14734.2 | Human leukocyte adhesion protein (LFA-1/Mac-1/p150,95 family) beta subunit mRNA |
| 297589 | 0.311 | 2602.3 | 11882 | AIM1 |
| 51699 | 0.309 | 5778.9 | 26546.5 | Human (GH) germline c-myc proto-oncogene, 5' flank |
| 183661 | 0.304 | 1021.5 | 4760.2 | T.P.K Receptor TIE-2 |
| 124927 | 0.302 | 868.7 | 4073 | ESTs, Highly similar to BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT [Homo sapiens] |
| 40764 | 0.301 | 4831.6 | 22793.1 | Human AD amyloid mRNA, complete cds |
| 158970 | 0.301 | 1938 | 9141.3 | HEK2 |
| 77577 | 0.3 | 1373.9 | 6494.9 | fra-2 |
| 47110 | 0.299 | 1864.9 | 8832.4 | Human mRNA for heterogeneous nuclear ribonucleoprotein D (hnRNP D) |
| 125555 | 0.296 | 1182.6 | 5664.7 | ESTs, Highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4 [Homo sapiens] |
| 236420 | 0.295 | 2798.9 | 13444.8 | receptor protein tyrosine kin |
| 51332 | 0.294 | 1581.8 | 7630.1 | Human mRNA for apoferritin H chain type |
| 291057 | 0.291 | 3081.5 | 15002.8 | p18 (cdk6 inhibitor) |
| 195889 | 0.29 | 1339.9 | 6542.2 | ESTs, Highly similar to TRANSCRIPTION FACTOR BTF3 [Homo sapiens] |
| 124554 | 0.283 | 2247 | 11241 | CSF-1 = Macrophage colony stimulating factor-1 |
| 153355 | 0.283 | 828.2 | 4147 | MIP1 alpha = LD78 = pAT464 |
| 23464 | 0.282 | 1222.8 | 6158.3 | MBP-2 |
| 470817 | 0.282 | 1744.8 | 8778.6 | FES/FPS |
| 52162 | 0.28 | 2812.9 | 14250.1 | Elongin B = SIII p18 subunit |
| 26801 | 0.276 | 10493.7 | 53881.3 | Human mRNA for LA45 gene |
| 279727 | 0.274 | 1421.6 | 7347.3 | MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) |
| 35516 | 0.273 | 377.4 | 1962.1 | Cyclin G |
| 154420 | 0.273 | 2077 | 10801.5 | PDGF receptor beta-like |
| 140358 | 0.272 | 1014.9 | 5289.2 | JV15-1 = Homologue of Mothers Against Decapentaplegic (MAD) |
| 359769 | 0.271 | 7235.3 | 37866.6 | mss4 |
| 156103 | 0.268 | 2187.8 | 11595.5 | DARC = Duffy |
| 145503 | 0.264 | 1057.1 | 5669.3 | p14 = CDK inhibitor |
| 38567 | 0.263 | 6293.4 | 33960.8 | Human mRNA for plasma gelsolin |
| 22445 | 0.259 | 4895.3 | 26771.2 | Human cytochrome b561 gene |
| 309477 | 0.258 | 6022.8 | 33133.3 | jun-B |
| 52222 | 0.251 | 3499.8 | 19770.6 | Human DNA for insulin-like growth factor II (IGF-2); exon 7 and additional ORF |
| 132420 | 0.251 | 1547.5 | 8748.8 | ets-2 |
| 347751 | 0.25 | 2788.6 | 15823.6 | FGR |
| 52650 | 0.249 | 2221.3 | 12632.7 | Human erythroblastosis virus oncogene homolog 2 (ets-2) mRNA, complete cds |
| 183950 | 0.248 | 2432.3 | 13906.1 | Thy-1 |
| 147744 | 0.244 | 3687.5 | 21457.1 | p57KIP2 |
| 295389 | 0.244 | 2155.3 | 12533.8 | GHR Receptor |
| 323555 | 0.242 | 2045.1 | 12002.2 | fyn = syn = slk |
| 359077 | 0.242 | 2324.2 | 13625 | Fibronectin Recpt Alpha |
| 143751 | 0.241 | 2634.6 | 15492.7 | LSP1 = lymphocyte-specific protein 1 |
| 154472 | 0.239 | 3790.4 | 22439.2 | Fibroblast growth factor receptor 1 |
| 49967 | 0.236 | 1756.8 | 10543.3 | Human intercellular adhesion molecule 2 (ICAM-2) gene |
| 162479 | 0.232 | 5150 | 31472.6 | ESTs, Highly similar to ETS-RELATED TRANSCRIPTION FACTOR ELF-1 [Homo sapiens] |
| 357909 | 0.232 | 1935.4 | 11817.2 | Receptor PTP mu = hR-PTPu |
| 36916 | 0.222 | 6690.7 | 42807.2 | Homo sapiens MHC HLA-B39 mRNA, complete cds |
| 144693 | 0.222 | 1833 | 11720 | TGF beta-1 |
| 486785 | 0.22 | 1243.2 | 8025.8 | plasminogen gene |
| 33415 | 0.217 | 7056.9 | 46051.7 | Human DNA for plasma glutathione peroxidase, exon 3, 4 and 5 |
| 53184 | 0.217 | 1958.9 | 12786.9 | Human transcobalamin II (TCII) mRNA, complete cds |
| 32750 | 0.214 | 5152.3 | 34128.9 | H.sapiens serum paraoxonase (PON) mRNA, complete cds |
| 50503 | 0.212 | 1326.9 | 8853.9 | CD18 = (LFA-1/Mac-1/p150,95 family) beta subunit |
| 359412 | 0.212 | 4325 | 28892.8 | Cyclin D2 |
| 37796 | 0.207 | 2765.7 | 18943.6 | Human DNA for osteopontin, complete cds |
| 49751 | 0.205 | 2219.2 | 15317.1 | H.sapiens mRNA for alpha 7B integrin |
| 24642 | 0.203 | 6103.8 | 42555.8 | Human phosphodiesterase I alpha mRNA |
| 38966 | 0.203 | 5286 | 36875.9 | Human Ca2-activated neutral protease large subunit (CANP) mRNA, complete cds |
| 21531 | 0.2 | 3088 | 21912.5 | Human helix-loop-helix basic phosphoprotein (G0S8) gene, complete cds |
| 32409 | 0.196 | 2219 | 16018.1 | Human mRNA (HA1756) for ORF, complete cds |
| 44311 | 0.196 | 5728.2 | 41456.5 | H.sapiens MGF gene exons 1&2 |
| 44495 | 0.195 | 4372.3 | 31767.3 | H.sapiens HSJ1 mRNA |
| 289428 | 0.192 | 1326.7 | 9811.8 | TRKB |
| 50032 | 0.187 | 2456.9 | 18660.9 | Human interferon-gamma receptor mRNA, complete cds |
| 34606 | 0.185 | 4981.9 | 38180.1 | Human HLA-E class I mRNA |
| 429976 | 0.181 | 2063.5 | 16126.6 | G0S3 = GOS-3? = human homologue of mouse Fos B |
| 39148 | 0.18 | 2375 | 18755.8 | Human fibromodulin mRNA, partial cds |
| 203132 | 0.18 | 1809.9 | 14282.9 | Apo-2 ligand = TRAIL |
| 307471 | 0.179 | 966.8 | 7667.3 | Cell Surface Glyco Prot A15 |
| 361728 | 0.177 | 976 | 7831.3 | CREATINE KINASE, B CHAIN |
| 33692 | 0.176 | 5756.5 | 46412.4 | Human aldehyde dehydrogenase 2 mRNA |
| 162772 | 0.175 | 4012.2 | 32460.6 | EGR-1 |
| 510381 | 0.169 | 4068.5 | 34176.2 | ESTs, Highly similar to ERYTHROID KRUEPPEL-LIKE TRANSCRIPTION FACTOR [Mus musculus] |
| 357807 | 0.166 | 2011.1 | 17150.9 | Cyclin E |
| 47648 | 0.165 | 2687.2 | 23128.6 | Human endoglin mRNA, 3' end |
| 303109 | 0.163 | 1135.7 | 9896.2 | RB INTRON ENCODED |
| 238577 | 0.159 | 1805.1 | 16105.3 | MHC Class II = DP beta |
| 22589 | 0.158 | 1815.4 | 16258 | Human mRNA (KIAA0085) for ORF (novel protein), partial cds |
| 27681 | 0.158 | 2045.1 | 18392.3 | Human smooth muscle cell calponin mRNA, complete cds |
| 39965 | 0.158 | 5060.6 | 45403 | Human 22kDa smooth muscle protein (SM22) mRNA, complete cds |
| 40111 | 0.157 | 4991.4 | 45174.4 | Human mRNA for transcription factor AREB6, complete cds |
| 108837 | 0.157 | 1740 | 15674.2 | MCAF |
| 363799 | 0.155 | 5372.8 | 48989 | CLK-1 (CDC-like kinase) |
| 365647 | 0.153 | 5031.9 | 46544.8 | CD4 |
| 44178 | 0.151 | 5365.2 | 50525.2 | H.sapiens TEGT gene |
| 259241 | 0.148 | 1525.5 | 14650.3 | HLA II M alpha |
| 486844 | 0.142 | 1510.9 | 15076.6 | GAP JUNCTION ALPHA-1 |
| 27899 | 0.141 | 1782.6 | 17930.9 | Gem |
| 161023 | 0.141 | 2920.7 | 29448.5 | Immunoglobulin J chain |
| 37347 | 0.132 | 4788.2 | 51256 | Human Ia-associated invariant gamma-chain gene |
| 25880 | 0.127 | 3203.2 | 35653.2 | Homo sapiens beta-globin (HBB) gene, with c to t allele, (J00179 bases 61989-63820) |
| 145932 | 0.125 | 887.8 | 10096 | Fc epsilon receptor gamma chain |
| 428248 | 0.117 | 1903.4 | 23157.7 | Activating transcription factor 3 |
| 209655 | 0.116 | 1880.3 | 23017.2 | TGF-BETA RECEPT |
| 512276 | 0.114 | 1124.2 | 14017.4 | vimentin |
| 154441 | 0.113 | 4102 | 51636.4 | Immunoglobulin alpha-1 chain constant region |
| 31687 | 0.11 | 2790.4 | 35807.4 | Human platelet-derived growth factor (PDGF) receptor mRNA, complete c |
| 254428 | 0.11 | 658.4 | 8485 | INTEGRIN ALPHA-6 |
| 358168 | 0.106 | 2087.4 | 27835 | p40MO15 |
| 359466 | 0.101 | 3025.8 | 42475.6 | VON WILLEBRAND FACTOR |
| 52415 | 0.098 | 2994.8 | 43391.8 | Human gene for C1-inhibitor |
| 40151 | 0.096 | 2027 | 29926.3 | Human apolipoprotein D mRNA, complete cds |
| 486716 | 0.093 | 2647.1 | 40302.4 | erk1 = extracellular signal-regulated kinase 1 |
| 417357 | 0.087 | 2363.5 | 38696.2 | mkp-1 = CL100 = MAP kinase phosphatase |
| 30966 | 0.076 | 2896.3 | 53868.7 | Human decorin (DCN) gene |
| 26474 | 0.069 | 2019.5 | 41640.7 | c-fos |
| 23346 | 0.067 | 2492.7 | 53044 | Human SPARC/osteonectin mRNA, complete cds |
| 487878 | 0.064 | 1256.4 | 27789.6 | osteonectin |
| 85906 | 0.061 | 1340.4 | 31060.9 | CD31 = PECAM-1 |
| 428248 | 0.054 | 1765.4 | 46187.2 | ATF-3 = activating transcription factor 3 |
| 488103 | 0.049 | 1080.9 | 31431.1 | ALPHA-2-MACROGLOBULIN |
| 38573 | 0.048 | 1773.5 | 52746.4 | Human lipoprotein lipase mRNA, complete cds |
| 280768 | 0.048 | 1520.9 | 45159 | Tumor Associated Antigen L6 |