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Canine Genome Research: References
Most of this list is comprised of papers
that include research by the NHGRI Dog Genome Project. We aim to include other important
Canine mapping and genomics papers, so if there's a reference you don't see
that you think should be here, please let us know at dog_genome@mail.nih.gov.
References are grouped into sections below. Click the title below to proceed
to the section.
Canine Population Structure and Morphology
Canine Linkage Mapping
Canine Radiation Hybrid Mapping
Mapping Software
Microsatellite Markers
Construction of a Canine BAC Library
Canine/Rodent hybrid cell lines
Disease Genes and Gene Mapping
Canine MHC
Conservation Biology
Review Articles
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Canine Population Structure and Morphology
- Parker HG, Kukekova AV, Akey DT, Goldstein O, Kirkness EF, Baysac KC,
Mosher DS, Aguirre GD, Acland GM, and Ostrander EA.(2007)
Breed relationships facilitate fine-mapping studies: A 7.8-kb
deletion cosegregates with Collie eye anomaly across multiple dog breeds.
Genome Research, Vol 17, Issue 11, 1562-1571
[Pubmed]
- Parker H.G., Kim L.V., Sutter N.B., Carlson S., Lorentzen T.D., Malek T.B.,
Johnson G.J., DeFrance H.B., Ostrander E.A., and Kruglyak L. (2004) Genetic
Structure of the Purebred Domestic Dog. Science, Vol 304, Issue 5674, 1160-1164
, 21 May 2004
[Pubmed]
Canine Linkage Mapping
- Werner P., Raducha M.G., Shin D., Ostrander E.A., Kirkness E., Patterson
D.F., Henthorn P.S. (2004) Assignment of 10 canine genes to the canine linkage
and comparative maps. Animal Genetics 2004 Jun;35(3):249-51
[Pubmed]
- Gordon D., Corwin M.B., Mellersh C.S., Ostrander E.A. and Ott J. (2003)
Establishing appropriate genome-wide significance levels for canine linkage
analyses. Journal of Heredity 94(1):1-7.
[Pubmed]
- Breen M., Jouquand S., Renier C., Mellersh C.S., Hitte C., Holmes
N.G., Cheron A., Suter N., Vignaux F., Bristow A.E., Priat C., McCann E.,
Andre C., Boundy S., Gitsham P., Thomas R., Bridge W.L., Spriggs H.F., Ryder
E.J., Curson A., Sampson J., Ostrander E.A., Binns M.M., and Galibert F. (2001).
Chromosome-Specific Single-Locus FISH Probes Allow Anchorage of an 1800-Marker
Integrated Radiation-Hybrid/Linkage Map of the Domestic Dog Genome to All
Chromosomes. Genome Research 11 (10):1784-1795
[Pubmed]
- Parker H.G., Yuhua X., Mellersh C.S., Khan S., Shibuya H., Johnson
G.S., Ostrander E.A. (2001) Meiotic linkage mapping of 52 genes onto the
canine map does not identify significant levels of microrearrangement. Mammalian
Genome 12(9): 713-8
[Pubmed]
- Mellersh C.S., Hitte C., Richman M., Vignaux F., Priat C., Jouquand
S., Werner P., Andre C., DeRose S., Patterson D.F., Ostrander E.A., Galibert
F. (2000) An integrated linkage-radiation hybrid map of the canine genome.
Mammalian Genome 11: 120-130
[Pubmed]
- Werner, P., Mellersh, C.S., Raducha, M.G., DeRose, S., Acland, G.M.,
Prociuk, U., Wiegand, N., Aguirre, G.D., Henthorn, P.S., Patterson, D.F.
and Ostrander, E.A. (1999). Anchoring of canine linkage groups with chromosome-specific
markers. Mammalian Genome 10: 814-823.
[Pubmed]
- Langston A.A., Mellersh C.S., Wiegand N.A., Acland G.M., Ray K.,
Aguirre G.D., Ostrander E.A. (1999) Toward a framework linkage map
of the canine genome. Journal of Heredity 90(1):7-14.
[Pubmed]
- Neff, M.W., Broman, K.W., Mellersh, C.S., Ray, K., Acland, G.M., Aguirre,
G.D., Ziegle, J.S. Ostrander, E.A. and Rine, J. (1999). A Second-generation
genetic linkage map of the domestic dog, Canis familiaris. Genetics 151:
803-820.
[Pubmed]
- Mellersh, C.S., Langston, A.A., Acland, G.M., Fleming, M.A., Ray,
K., Wiegand, N.A., Francisco, L.V., Gibbs, M., Aguirre, G.D.
and Ostrander, E.A. (1997). A linkage map of the canine genome. Genomics 46:
326-336.
[Pubmed]
- Lingaas F., Sorensen A., Juneja R.K., Johansson S., Fredholm M.,
Wintero A.K., Sampson J., Mellersh C., Curzon A., Holmes N.G.,
Binns M.M., Dickens H.F., Ryder E.J., Gerlach J., Baumle E., Dolf G. (1997).
Towards construction of a canine linkage map: establishment of 16 linkage groups.
Mammalian Genome 8: 218-221.
[Pubmed]
Canine Radiation Hybrid Mapping
- Guyon R., Lorentzen T.D., Hitte C., Kim L., Cadieu E., Parker H.G.,
Quignon P., Lowe J.K., Renier C., Gelfenbeyn B., Vignaux F., DeFrance H.B.,
Gloux S., Mahairas G.G., Andre C., Galibert F., and Ostrander E.A. (2003).
A 1Mb Resolution Radiation Hybrid Map of the Canine Genome. Proceedings
of the National Academy of Sciences 100 (9): 5296-5301
[Pubmed]
- Hitte C., Lorentzen T.D., Guyon R., Kim L., Cadieu E., Parker H.G.,
Quignon P., Lowe J.K., Gelfenbeyn B., Andre C., Ostrander E.A. and Galibert
F. (2003). Comparison of the MultiMap and TSP/CONCORDE Packages for Constructing
Radiation Hybrid Maps. Journal of Heredity 94(1):
9-13
[Pubmed]
- Breen M., Jouquand S., Renier C., Mellersh C.S., Hitte C., Holmes
N.G., Cheron A., Suter N., Vignaux F., Bristow A.E., Priat C., McCann
E., Andre C., Boundy S., Gitsham P., Thomas R., Bridge W.L., Spriggs H.F.,
Ryder E.J., Curson A., Sampson J., Ostrander E.A., Binns M.M., and Galibert F. (2001).
Chromosome-Specific Single-Locus FISH Probes Allow Anchorage of an 1800-Marker
Integrated Radiation-Hybrid/Linkage Map of the Domestic Dog Genome to
All Chromosomes. Genome Research 11 (10):1784-1795 <Also
listed in Canine Linkage Mapping>
[Pubmed]
- Mellersh C.S., Hitte C., Richman M., Vignaux F., Priat C., Jouquand
S., Werner P., Andre C., DeRose S., Patterson D.F., Ostrander E.A.,
Galibert F. (2000) An integrated linkage-radiation hybrid map of the canine
genome.
Mammalian Genome 11: 120-130 <Also
listed in Canine Linkage Mapping>
[Pubmed]
- Vignaux F. Priat C. Jouquand S. Hitte C. Jiang Z. Cheron A. Renier
C. Andre C. Galibert F. (1999). Toward a dog radiation hybrid map. Journal
of Heredity 90: 62-7.
[Pubmed]
- Priat C. Hitte C. Vignaux F. Renier C. Jiang Z. Jouquand S. Cheron
A. Andre C. Galibert F. (1998). A whole-genome radiation hybrid
map of the dog genome. Genomics 54: 361-78.
[Pubmed]
Mapping Software (used by
the NHGRI Dog Genome Project for Genetic Mapping)
- Matise TC, Perlin M, Chakravarti A. (1994) Automated construction
of genetic linkage maps using an expert system (MultiMap): a human genome
linkage map. Nature Genetics 6(4):384-90.
[Pubmed]
- Agarwala, R., Applegate, D. L., Maglott, D., Schuler, G. D. & Schaffer,
A. A. (2000) A fast and scalable radiation hybrid map construction and
integration strategy. Genome Research 10: 350-364
[Pubmed]
Microsatellite Markers
(Markers are also described in the Linkage Mapping references)
- Dickens H.F., Holmes N.G., Ryder E., Breen M., Thomas R., Suter N.,
Sampson J., Langford C.F., Ross M., Carter N.P., Binns M.M. (1999) Use of
cosmid-derived and chromosome-specific canine microsatellites. Journal
of Heredity 90:
52-4
[Pubmed]
- Francisco, L.V., Langston, A.A., Mellersh, C.S., Neal, C.L., and
Ostrander, E.A. (1996). A class of highly polymorphic tetranucleotide repeats
for canine genetic mapping. Mammalian Genome 7:
359-362.
[Pubmed]
- Ostrander, E.A., Mapa, F.A., Yee, M., and Rine, J. (1995). One Hundred
and One Simple sequence Repeat-Based markers for the Canine Genome. Mammalian
Genome 6: 192-195.
[Pubmed]
- Ostrander, E.A., Sprague Jr., G.F., and Rine, J. (1993). Identification
and Characterization of Dinucleotide Repeat (CA)n Markers for Genetic
Mapping in Dog. Genomics 16: 207-213.
[Pubmed]
- Ostrander, E.A., Jong, P.M., Rine, J., and Duyk, G. (1992). Construction
of Small-Insert Genomic DNA Libraries Highly Enriched for Microsatellite
Repeat Sequences. Proceedings of the National Academy of Sciences 89: 3419-3423.
[Pubmed]
Construction of a Canine BAC Library
- Li R., Mignot E., Faraco J., Kadotani H., Cantanese J., Zhao B.,
Lin X., Hinton L., Ostrander E.A., Patterson D.F., de Jong P.J. (1999) Construction
and characterization of an eightfold redundant dog genomic bacterial artificial
chromosome library. Genomics 58(1): 9-17.
[Pubmed]
Grouping Canine Markers and Genes by analysis of Canine-Rodent Hybrid Cell
Lines
- Langston, A.A., Mellersh, C.S., Neal, C.S., Ray, K., Acland, G.M., Gibbs,
M., Aguirre, G.D., Fournier, R.E.K. and Ostrander, E.A. (1997) Construction
of a panel of canine-rodent hybrid cell lines for use in partitioning of
the canine genome.
Genomics 46: 317-325
[Pubmed]
Disease Genes and Disease Gene Mapping
- Chase K., Lawler D.F., Adler F.R., Ostrander E.A. and Lark K.G. (2004)
Bilaterally asymmetric effects of quantitative trait loci (QTLs): QTLs that
affect laxity in the right versus left coxofemoral (hip) joints of the dog (Canis familiaris). American
Journal of Medical Genetics. Jan. 30; 124A(3):239-47.
[Pubmed]
- Thomas R., Smith
K.C., Ostrander E.A., Galibert F. and Breen M. (2003) Chromosome aberrations
in canine multicentric lymphomas detected with comparative
genomic hybridisation and a panel of single locus probes. British Journal of Cancer.
Oct 20; 89(8):1530-7.
[Pubmed]
- Lingaas F., Comstock K.E., Kirkness E.F., Sorensen A., Aarskaug T., Hitte
C., Nickerson M.L., Moe L., Schmidt L.S., Thomas R., Breen M.,
Galibert F., Zbar B. and Ostrander E.A. (2003) A mutation in the canine BHD gene is associated with hereditary
multifocal renal cystadenocarcinoma and nodular dermatofibrosis
in the German Shepherd dog. Human Molecular Genetics. Dec 1; 12(23):3043-53.
[Pubmed]
- Thomas R., Fiegler H., Ostrander E.A., Galibert F., Carter N.P. and Breen
M. (2003) A canine cancer-gene microarray for CGH analysis of tumors. Cytogenetic
and Genome Research. 102(1-4):254-60.
[Pubmed]
- Lowe J.K., Kukekova A.V., Kirkness E.F., Langlois M.C., Aguirre G.D., Acland
G.M. and Ostrander E.A. (2003) Linkage mapping of the primary disease locus
for collie eye anomaly. Genomics. Jul; 82(1):86-95.
[Pubmed]
- Lowe J.K., Guyon R., Cox M.L., Mitchell D.C., Lonkar A.L., Lingaas F.,
Andre C., Galibert F., Ostrander E.A. and Murphy K.E. (2003) Radiation
hybrid mapping of the canine type I and
type IV collagen gene subfamilies. Functional and Integrative Genomics.
Jul; 3(3):112-6.
[Pubmed]
- Chase K., Carrier D.R., Adler F.R., Jarvik T., Ostrander E.A., Lorentzen
T.D., and Lark K.G. (2002) Genetic basis for systems of skeletal quantitative
traits: Principal component analysis of the canid skeleton. Proceedings
of the National Academy of Sciences 99(15):
9930-5
[Pubmed]
- Sidjanin D.J., Lowe J.K., McElwee J.L., Milne B.S., Phippen T.M.,
Sargan D.R., Aguirre G.D., Acland G.M., Ostrander E.A. (2002) Canine CNGB3
mutations establish cone degeneration as orthologous to the human achromatopsia
locus ACHM3. Human Molecular Genetics 11(16): 1823-1833
[Pubmed]
- Sidjanin D.J., Zangerl B., Johnson J.L., Xue F., Mellersh C., Ostrander
E.A., Acland G., Aguirre G.D., (2002) Cloning of the canine delta tubulin
cDNA (TUBD) and mapping to CFA9. Animal Genetics. 33(2):
161-2
[Pubmed]
- Akhmedov N.B., Baldwin V.J., Zangerl B., Kijas J.W., Hunter L., Minoofar
K.D., Mellersh C., Ostrander E.A., Acland G.M., Farber D.B., Aguirre
G.D., (2002) Cloning and characterization of the canine photoreceptor specific
cone-rod homeobox (CRX) gene and evaluation as a candidate for early
onset photoreceptor diseases in the dog. Molecular Vision 8: 79-84.
[Pubmed]
- Miller A.B., Lowe J.K., Ostrander E.A., Galibert F., Murphy K.E.
(2001) Cloning, sequence analysis and radiation hybrid mapping of
a mammalian KRT2p gene. Functional and Integrative Genomics 1(5):
305-11.
[Pubmed]
- Zhang Q., Acland G.M., Zangerl B., Johnson J.L., Mao Z., Zeiss C.J.,
Ostrander E.A., Aguirre G.D. (2001) Fine mapping of canine XLPRA
establishes homology of the human and canine RP3 intervals. Investigative
Ophthalmology and Visual Science 42(11): 2466-71.
[Pubmed]
- Credille K.M., Venta P.J., Breen M., Lowe J.K., Murphy K.E., Ostrander
E.A., Galibert F., Dunstan R.W. (2001) DNA sequence and physical
mapping of the canine transglutaminase 1 gene. Cytogenetics and Cell
Genetics 93(1-2):
73-6.
[Pubmed]
- Li R., Faraco J.H., Lin L., Lin X., Hinton L., Rogers W., Lowe J.K.,
Ostrander E.A., Mignot E. (2001) Physical and radiation hybrid
mapping of canine chromosome 12, in a region corresponding to human chromosome
6p12-q12.
Genomics 73(3): 299-315.
[Pubmed]
- Richman M., Mellersh C.S., Andre C., Galibert F., Ostrander E.A.
(2001) Characterization of a minimal screening set of 172
microsatellite markers for genome-wide screens of the canine genome. Journal
of Biochemical and Biophysical Methods 47(1-2): 137-49.
[Pubmed]
- Jonasdottir TJ, Mellersh CS, Moe L, Vignaux F, Ostrander EA, Lingaas
F. (2000) Chromosomal assignment of canine TSC2, PKD1 and
CLN3 genes by radiation hybrid- and linkage analyses. Animal Genetics. 31(2):
123-6.
[Pubmed]
- Jonasdottir T.J., Mellersh C.S., Moe L., Heggebo R., Gamlem H., Ostrander
E.A., Lingaas F. (2000). Genetic mapping of a naturally
occurring hereditary renal cancer syndrome in dogs. Proceedings of the
National Academy of Sciences 97:
4132-7
[Pubmed]
- Wang W., Zhang Q., Acland G.M., Mellersh C., Ostrander E.A., Ray K., Aguirre
G.D. (1999) Molecular characterization and mapping
of canine cGMP-phosphodiesterase delta subunit (PDE6D). Gene 236(2):
325-32.
[Pubmed]
- Acland G.M., Ray K., Mellersh C.S., Langston A.A., Rine J., Ostrander
E.A., Aguirre G.D. (1999) A novel retinal degeneration locus identified by linkage and comparative mapping of canine early retinal
degeneration. Genomics 59(2): 134-42.
[Pubmed]
- Gu W., Ray K., Pearce-Kelling S., Baldwin V.J., Langston A.A., Ray
J., Ostrander E.A., Acland G.M., Aguirre G.D. (1999)
Evaluation of the APOH gene as a positional candidate for prcd in dogs. Investigative
Ophthalmology and Visual Science 40(6): 1229-37.
[Pubmed]
- Gu, W., Acland, G.M., Langston, A.A., Ostrander, E.A., Aguirre, G. D.,
Ray, K. (1998). Identification of a RAPD marker linked to inherited progressive rod-cone degeneration (prcd) in dogs. Mammalian
Genome 9: 740-744.
[Pubmed]
- Blazej, R.G., Mellersh, C.S., Cork, L.C., and Ostrander E.A. (1998).
Hereditary canine spinal muscular atrophy is molecularly distinct from the human spinal muscular atrophies. Journal
of Heredity 89: 531-537.
[Pubmed]
- Acland G.M., Ray K., Mellersh C.S., Gu W., Langston A.A., Rine J.,
Ostrander E.A. and Aguirre G.D. (1998). Linkage
analysis and comparative mapping of canine progressive rod-cone degeneration
(prcd) establishes potential locus homology with retinitis pigmentosa (RP17)
in humans. Proceedings of the National Academy of Sciences 95:
3048-3053.
[Pubmed]
- Szabo, C.I., Wagner, L.A., Francisco, L.V., Roach, J., Argonza, R.,
King, M.-C., and Ostrander, E.A. (1996).
Human, canine and murine BRCA1 genes: Sequence comparison among species. Human
Molecular Genetics 5: 1289-1298.
[Pubmed]
- Deschenes SM, Puck JM, Dutra AS, Somberg RL, Felsburg PJ, Henthorn
PS. (1994). Comparative mapping of canine
and human proximal Xq and genetic analysis of canine X-linked severe combined
immunodeficiency. Genomics 23: 62-68.
[Pubmed]
Canine MHC
- Graumann, M.B., DeRose, S.A., Ostrander E.A., and Storb, R. (1998).
Polymorphism analysis of four canine MHC class I genes. Tissue Antigens 51:
374-381.
[Pubmed]
- Wagner, J.L., Burnett, R.C., DeRose, S.C., Francisco, L.V., Storb,
R., and Ostrander, E.A. (1996). Histocompatibility testing of dog families
with highly polymorphic microsatellite markers. Transplantation 62:
876-877.
[Pubmed]
- Wagner, L.A., Kiem, H.-P., McSweeney, P., Storb, R., Schuening, F.G.,
and Ostrander, E.A. (1995). Development of a clonality assay for canine hematopoietic
stem cells. Blood 86: 3265-3267.
[Pubmed]
- Burnett, R.C., Francisco, L.V., DeRose, S.A., Storb, R., and Ostrander
E.A. (1995). Identification and characterization of a highly polymorphic
microsatellite marker within the canine MHC class I region. Mammalian
Genome 6: 684-685.
[Pubmed]
Conservation Biology
- Gottelli, D., Sillero-Zubiri, C., Applebaum, G.D., Roy, M.S., Girman,
D.J., Garcia-Moreno, J., Ostrander, E.A. and Wayne, R.K.. (1994). Molecular
genetics of the most endangered canid: The Ethiopian wolf, Canis simensis.
Molecular Ecology. 3: 301-312.
[Pubmed]
- Roy, M.S., Geffen, E., Smith, D., Ostrander, E., and Wayne, R.K.
(1994). Patterns of differentiation and hybridization in North American wolf-like
canids revealed by analysis of microsatellite loci. Molecular Biology
and Evolution 11: 553-70.
[Pubmed]
Reviews
- Wayne R.K. and Ostrander E.A. (2004) Out of the dog house: the emergence of
the canine genome. Heredity. Apr;92(4):273-4.
[Pubmed]
- Ostrander E.A. and Comstock K.E. (2004) The domestic dog genome. Current
Biology. Feb 3;14(3):R98-9.
[Pubmed]
- Acland G.M., Ostrander E.A. (2003) Population Genetics: The dog that
came in from the cold. Heredity, 90(3):201-2.
[Pubmed]
- Ostrander E.A., Kruglyak L. (2000) Unleashing the canine genome.
Genome Research 10(9): 1271-4
[Pubmed]
- Ostrander E.A., Galibert F., Patterson D.F. (2000). Canine genetics
comes of age. Trends in Genetics. 16: 117-24
[Pubmed]
- Ostrander E.A., Giniger E. (1999) Let sleeping dogs lie? Nature Genetics 23(1): 3-4.
[Pubmed]
- Wayne R.K., Ostrander E.A. (1999). Origin, genetic diversity, and
genome structure of the domestic dog. Bioessays 21:
247-57.
[Pubmed]
- Langston, A.A., Mellersh, C.S., Wiegand, N.A., Acland, G.M., Ray,
K., Aguirre, G.D., and Ostrander, E.A. (1999). Towards a framework
linkage map of the canine genome. Journal of Heredity 90:
7-14.
[Pubmed]
- Ostrander, E.A., and Giniger, E. (1997). Semper Fidelis: What man's
best friend can teach us about human biology and disease. American
Journal of Human Genetics. 61: 475-480.
[Pubmed]
- Mellersh, C.S., and Ostrander, E.A. (1997). The Canine Genome.
Advances in Veterinary Medicine. J. Womack, (ed.), Academic Press 40:
191-215.
[Pubmed]
- Ostrander, E.A., Rine, J., Sacks, G. H. Jr., and Cork, L.C. (1993).
What is the role of molecular genetics in modern veterinary
practice. Journal
of the American Veterinary Association 203: 1259-1262.
[Pubmed]
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