Canine Chromosome 21 (Guyon et. al. 2003)

Marker_Name Marker_Type Chromosome Position_Number Position_TSPunits Position_Mb Forward_Primer Reverse_Primer Product_Size HET PIC Accession_Number References
EST2A8 EST cfa21 1 0 0 GACATAGGGATGTCTCAGTATCTGG GATCCTACCTGGATAGTGCTTTTCT 185 NA NA AJ537230 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST26A5 EST cfa21 2 252 1.9 CAGTTATGAAGTCACATTCAATCCA GACTAAAAGCCCCACTACCATAATC 200 NA NA AJ537228 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST8D12 EST cfa21 3 488 3.7 GTCAATAATCACATCAAATGTGGAG GACTAAAAGGCCTGTGATAAGTCAG 214 NA NA AJ537234 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH3803 Microsatellite cfa21 4 669 5.1 TTATATTAGGAAGGAAAGGAGGG ATGACACATAGGGGAAATTGAG 488 0.76 0.75 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_381-B10 BAC cfa21 5 742 5.6 AAGCAGGGATCGGCTAGG TTTCCTTCAATAAGTTTAGTCCTGG 317 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_374-A7 BAC cfa21 6 815 6.2 AGAACAAAGCCTATTGTGATGG AGAATGAAACCTTGCTTTTCAG 119 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BDNF Gene cfa21 7 943 7.1 CCTTTCGACACAGGGACTTT GACAGCATTAGCGAGTGGGT 103 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
DINRA21 Microsatellite cfa21 8 1070 8.1 ATGTAGTTGAGATTTCTCCTACGG TAATGGCTGATTTATTTGGTGG 79 NA NA NA Mariat et al., 1996 (Animal Genetics 27, 433-442)
FH2233 Microsatellite cfa21 9 1179 8.9 CCAATGCCAAATTCCTGACT ACCATTTCCTTTCCCAAAGT 292 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN313E19 Microsatellite cfa21 10 1264 9.6 CAATGCTGAAACCATTGTGC TGATTCTCCTGTCCAATGTCTG 223 NA 0.32 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN187M02 Microsatellite cfa21 11 1322 10 CTTGGCCCTTCCTACACAAA TGTTCTTATTCTGAGCCCGC 193 NA 0.58 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
BAC_373-O21 BAC cfa21 12 1346 10.2 TGTTTCAGTGGCTTACAATGACTT GAGTTTGAGTGATGGGTGATACTG 259 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST6D2 EST cfa21 13 1418 10.7 ACTTACACAAATACAGCAGTCAGCA AGCTTCCTCTAGTGGTTCTAGTGGT 194 NA NA AJ537232 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH3435 Microsatellite cfa21 14 1442 10.9 CATGTGTTATCCCATTTGTCC AAACATACCTCCACCAAATCC 193 0.73 0.7 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST7E8 EST cfa21 15 1628 12.3 AGGGAGTCCCCTTAGCTCCTC AATGTACTAACAGGTAGAGGGAAGGA 114 NA NA AJ537233 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
SAA2 Gene cfa21 16 1808 13.7 AGGCCGGAGTGGCAAAGAC TGGCCAGAGATCTCAACGAGTG 143 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH3880 Microsatellite cfa21 17 1940 14.7 GCAGCCTTAGAAGATAAGAAAAGG CTCTCACTCTGCGTTCTGC 352 0.74 0.72 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
PTH Gene cfa21 18 2107 16 CACTGCTGTAGACAGCATAGGG CATGGCTAACAATGGATTACATGTA 106 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
CALCA Gene cfa21 19 2179 16.5 CGGGGCTGAAACACCTGG AATGCCAGCTGGAAGAGCAATC 187 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
EST11A11 EST cfa21 20 2264 17.2 CTGATGGAGGAATTTCTTGTTCTAA TTCACAGAGGAAGAACTGAAAGAAT 202 NA NA AJ537222 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_372-M20 BAC cfa21 21 2322 17.6 TGTAAACGGGGATGATAATAGC CATAGTGCTTCCCTCTGTAAGG 162 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH2914 Microsatellite cfa21 22 2346 17.8 GTGATCCACTTGCTTGTATCC ATAGCCTTGGGAATTTTTGC 199 0.63 0.61 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_385-F17 BAC cfa21 23 2433 18.4 AGGGAACAAGGTGAGAGCTTAG AACCAACTTAAGCCTTCCTTTC 396 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_382-E18 BAC cfa21 24 2519 19.1 TCCTTGGTCTTTTCTACACTGG TGATGAAGAGGGATCGTTTATG 316 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN107L03 Microsatellite cfa21 25 2577 19.5 CACATCCGGGACTCACACC CCCCATTCATTTGCTTTTA 218 NA 0.32 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN109A16 Microsatellite cfa21 26 2619 19.8 CACATCCGGGACTCACACC CCCCATTCATTTGCTTTTA 219 NA 0.32 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN118B15 Microsatellite cfa21 27 2643 20 TAAACTGGCGTAACCTCTC TCCCAACAGCCAGTCCGTATC 218 NA 0.72 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3117 Microsatellite cfa21 28 2730 20.7 TCTGGGTACCTCAAATAAGTGG CAACAGCCAAAAGATGGAAG 277 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_375-E6 BAC cfa21 29 2754 20.9 CAGCCACCAACTATCTTTCTTTTT TGAGAGACTCTTAACGATAGGAAACA 235 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_381-D11 BAC cfa21 30 2813 21.3 GAAGAGTGCGTAAAGGATGAAG AAAGGAATATCTCTGTAGCCCC 127 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN309L01 Microsatellite cfa21 31 2887 21.9 GGGAAATGCTGTGTCATGTG TGAACCACTGGGGTAAGTCC 190 NA 0.69 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
HUEST-D29070 EST cfa21 32 2974 22.5 GGTTCCCCAGACTCCAAACA TGCAGAAGTGCTCGGGC 141 NA NA NA Priat*, Jiang* et al., 1999 (Mammalian Genome 10, 803-813)
EST13C5 EST cfa21 33 3085 23.4 TGAAGGACTTTTCTATCATTTTCATC TGTAAGGCATGTAACACCTTTATGA 212 NA NA AJ537224 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH2974 Microsatellite cfa21 34 3206 24.3 ATGTATGATGGTGGATGTTAGC GACCTCTCAATTGCTTTTGG 324 0.87 0.86 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH2972 Microsatellite cfa21 35 3248 24.6 TTGGTGGTGATCATTTCACA GCCAGGTTTCCTGAAAGATA 251 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN285A14 Microsatellite cfa21 36 3306 25 GGCTCCTGTACACCCCACTA CAAGACCGACCACCCTAGAA 309 NA 0.72 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3604 Microsatellite cfa21 37 3462 26.2 TGGCTGTGTTGAAGTGTTCC GATGTTTGGAGGTAAGTCTGG 267 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN144A16 Microsatellite cfa21 38 3621 27.4 CGGTTTCGTTCTTTTTATGGTT AGGTGTTGGCAAGGATATGG 340 NA 0.34 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
CFOR08H01P Gene cfa21 39 3704 28.1 TTTTGTGCCCCCAACAGA AGGATGCGGACATAGTACTCT 160 NA NA AJ431458 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
CCKBR Gene cfa21 40 3832 29 GTGCTGGAGCTGAACAAACA TTCCAGCTAGCACGGAGTTT 170 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH2441 Microsatellite cfa21 41 3917 29.7 TAGTTGTGTGCATGATCTCG TGGAGAAAGTTCCATGTGCA 129 0.76 0.73 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
CFOR10F05 Gene cfa21 42 3941 29.9 CCCTACACTACTCTAGCATCATGAC ATGTAGGCGAATATGCCTGAG 394 NA NA AJ431481 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
CLN2 Gene cfa21 43 3983 30.2 GGTGGGATCCTATCCCTGAT TCAGGACCCCATCAGAACTC NA NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
CFOR12A07 Gene cfa21 44 4105 31.1 CCTCTCCACTATGGTGTCATTG ATGGCCAGAACAAAGTCTGTA 227 NA NA AJ431494 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
STS155H06 SNP,STS cfa21 45 4216 31.9 GAGTGCTTATGTCCTAGACACCAAT GTTCTCTTAGTCCAATATCCAGCAA 584 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
HBB Gene cfa21 46 4289 32.5 CAATGCTAAAGTGAAGGCCC CTGAGCTTAGCAAAGGTGCC 100 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
EST12F10 EST cfa21 47 4347 32.9 TTCTCACAGGTTAGGACTCAGTTTT TAAGAATTGGTATTTTGGGAATCAA 202 NA NA AJ537223 Breen et al., 2001 (Genome Res. 11, 1784-1795)
G02620 Microsatellite cfa21 47 4347 32.9 CTGCATGGAGCCTGCTTCTCT GAATTGTAAGTTTTCAACTGCC 144 NA NA NA Yuzbasiyan-Gurkan et al., web site
FH2943 Microsatellite cfa21 48 4389 33.3 CATCTAAGCCTCCAGTCTTGC GAAAGGCTTCAACAGGGGGG 394 0.84 0.82 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
UCP3 Gene cfa21 49 4462 33.8 GTTTTGCTGATCTCCTCACCTTT GAACTGCTTGACAGAGTCATAGAGG 242 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
UCP2 Gene cfa21 50 4504 34.1 TACGACTCTGTCAAGCAATTCTACA ATGGTCTTGTAGGCATCAACAGT 200 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
BAC_373-I14 BAC,Microsatellite cfa21 51 4576 34.7 TGGATAAGAATGACAGTAAACAAAC AATGCCATCACTTCAGAAAGAC 320 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
KIAA0102 Gene cfa21 52 4618 35 GATGCATACGAGCCTGAAATATC TCTGTTTCCTTCTCTCTCACCC 133 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH3118 Microsatellite cfa21 53 4642 35.2 AGTTTAGTGCCACCTTCAGC CCAACTCCTACTTCATTGTTCC 229 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN264O17 Microsatellite cfa21 54 4684 35.5 ATTGAGCAAAGGCTCGAAAA GCAGGGTCTGAGCTTGTAGG 209 NA 0.63 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN62H01 Microsatellite cfa21 55 4708 35.7 CCTATGTCTCTGCCTCTC CCCAGCTCTTTTCCTCCC 116 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN37A15 Microsatellite cfa21 56 4859 36.8 AGCAAGGTCCACAAGAGCC GTAGTTCCAGTCACATCCT 182 NA 0.63 AJ391609 Jouquand*, Priat* et al., 2000 (Animal Genetics 31, 266-272)
BAC_372-A4 BAC,Microsatellite cfa21 57 4980 37.7 GAATTGCACTGGAGTCTAAAGC GAGACTAAAACAATGGACACGG 270 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_374-I5 BAC cfa21 58 5038 38.2 TTGCTGTTTTCTGTTCTTTTGATAA AACCAAATAACCTGATTTTTAAATGG 200 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_385-G1 BAC cfa21 59 5062 38.3 GAGTGGAAAGCCTAATTGAATG CAGAAAACAAAACAATCAACCC 229 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
AHTH298 Microsatellite cfa21 60 5104 38.7 CCAGGCATTCGAGGGTG TCCCAGAACTTGAGGAACCATAG 103 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
EST26G7 EST cfa21 61 5146 39 TTTATTGAAGGAAATAAAACTTGTGC ATGTTTGCTACCTCCTGCTATCTTT 159 NA NA AJ537229 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST19G6 EST cfa21 62 5188 39.3 ATTCTAGCAATGATGAAAGTGAAGC CATCTGCTAGGATGGCTTCTTC 102 NA NA AJ537227 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN263B23 Microsatellite cfa21 63 5260 39.8 CCATCATAAGTCAGGCACCA TATAAAATGCCTCCCCCTCC 270 NA 0.32 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN256J10 Microsatellite cfa21 64 5332 40.4 TCCTAATTACCCCTGACCCC GTGTGGAAGTTCCCTCCTGA 330 NA 0 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
DTR21.10 Microsatellite cfa21 65 5405 40.9 CATTCCTGCTTTAAGGTGAG GGATCATTTCACTCCTTTGT 246 NA NA AJ237678 Tiret et. al., Animal Gen. 30, 462-473 (1999)
REN108B17 Microsatellite cfa21 66 5447 41.3 AGAGCATGATGCTGGAAC TCTGATATGTTCAAGCTATGAATT 230 NA 0.32 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3823 Microsatellite cfa21 67 5471 41.4 GATTGAGCCTAGCATCAGACTC GCTCACAGCTATTGTCTTTTTG 372 0.83 0.82 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST6D1 EST cfa21 68 5530 41.9 AATCAGGTTTTGAAAGACAGCTTTT CTGTGGGCTTCTTAGAACACTACTC 186 NA NA AJ537231 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN160C04 Microsatellite cfa21 69 5604 42.5 GAGACCATCAAACTGGCTCC CCTCCAAAGCCCTATATCCA 113 NA 0.54 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN252J02 Microsatellite cfa21 70 5704 43.2 AGGCGGCACTAAACTGCTAA CACCCAGAAAGCTCAGAAGG 299 NA 0.54 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN68M20 Microsatellite cfa21 70 5704 43.2 GCTTCAAATTATCCCACTGAG CCCAGCTTTCTATATCAATGG 230 NA 0.72 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
EST17H2 EST cfa21 71 5728 43.4 CACCCATTTTTGCTAACATACATTT GTTAGCGAAGAATTAAACTGCACTG 200 NA NA AJ537226 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN59K01 Microsatellite cfa21 72 5752 43.6 CCCAAGTGTCCATCTCCAT TTTTCTAATTCCAACCAT 146 NA 0.54 NA Mellersh et al., 2000 (Mammalian Genome 11, 120-130)
REN199O08 Microsatellite cfa21 73 5811 44 TTGCTAGACCCCTCACATCC GTGGTGTTCTCCATCTGCAC 243 NA 0.76 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN245F15 Microsatellite cfa21 74 5912 44.8 AAGCAAAGGAAGCCATTCAA CGACCATCTGAATTCTTTTCTG 210 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3398 Microsatellite cfa21 75 5971 45.2 CAAAGTTCAAACAGGAATGG GTTCTGTGCTGAGCATTGG 221 0.78 0.76 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
EST13F9 EST cfa21 76 6014 45.6 GCTCTAATTCTCCTAGAAGCCAGAT ATGATGCTTTTCTTTTCAGAACTTG 197 NA NA AJ537225 Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_385-A9 BAC cfa21 77 6038 45.7 TGACCTTCTTCCAGGTACTTTC CTTGTAGAATCAGAGTGGTGGG 381 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_382-G16 BAC cfa21 78 6125 46.4 ATGTTTGTAAAATGGCATAACC TAAAGAGAGTTGAGGGTTGAGG 339 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN108G11 Microsatellite cfa21 79 6212 47.1 TGGGATTCAGAAACCTCAT AGCAGCCTTCTTCCAATAC 165 NA 0.34 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
TYR Gene cfa21 80 6298 47.7 GTAGCCGATTGGAGGAGTACAATA CTTCCAGTGTATTCCTAAAGCTGAA 210 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
REN242O23 Microsatellite cfa21 81 6484 49.1 CATGACCTGAGCTGAAACCA CGTCAACTGGTTCAGGGAAT 255 NA 0 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3624 Microsatellite cfa21 82 6619 50.1 GATCAGGATGGAATTTGTGG GGATTAAAGTTCTGCTGTCACC 359 0.8 0.79 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
REN260L24 Microsatellite cfa21 83 6679 50.6 CTTCCCACTGTGCCAAAAAC TATGTCGAGCTCATGCCTTG 355 NA 0.69 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
BAC_381-M17 BAC cfa21 84 6782 51.4 TTCTCCTTCAAACCAATTCAAG AATTGTTCTTGTTGTCGTCTCC 143 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
BAC_382-A10 BAC cfa21 85 6942 52.6 GGTGAATTTGGGTGATAGTGAC CCGACTCTCATCCTTGTAATTC 388 NA NA NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH2617 Microsatellite cfa21 86 7033 53.3 TTCTGGTTCCCTCTATGCTCT ATCTAAATTCCCCTGCTTGC 236 0.56 0.46 NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
DGN17 Microsatellite cfa21 87 7077 53.6 CTCAGGGTTGTGAATTCAAGCC ATAGATATCTTATGTATGCCCTGGC 350 NA NA NA Mariat et al., 1998 (Animal Genetics 29,150-160)
FH2473 Microsatellite cfa21 88 7166 54.3 GTAAAGCTGGGTGACTGAAAGG CCTCCTATGCCCTTCTTTCC 398 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH3069 Microsatellite cfa21 89 7383 55.9 CATGCCTGACTCAACTGATG TATGGACCTTCGTTCAGAGG 161 0.55 0.53 NA Guyon et. al., 2003 (PNAS 100{9}, 5296-5301)
FH2161 Microsatellite cfa21 90 7526 57 TCAGCAAGAAACCCTCCAGT CATTCCCAACGGAGGACTCT 250 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
FH2312 Microsatellite cfa21 91 7604 57.6 AAAATAATACTCATCTATATGCTGCC ACAACATAAGAATGTGTGTCATCA 318 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)
PGR Gene cfa21 92 7695 58.3 ATGAAAGCCAAGCCCTAAGC GGCAGTGACTTAGACCACTTGAC 220 NA NA NA Breen et al., 2001 (Genome Res. 11, 1784-1795)

 

 

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