Map of CFA27

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
COL2A1 GENE type II collagen cagctggagtcaaggtgagtatct cttagagaagagtgttccagggaga 168 60 -
FH2289 MSAT (GAAA)~39 CATGGTCTCAGGATCCTAGGA CTAAGCATTCTCTCTGATGGTCTT 320 ND -
RVCE MSAT (CA)16 AGGGTCAAGGGAGGCAGGTC CCCCTCCCCTTTCTCCCTCG 124 ND -
REN12H20 MSAT (CTC)9 CCCGGTTCTTGCGTTNTGAC TAGACATGGACAAGGAAGAT 125 52 0
AHTK18 MSAT/CSM (GT)15 CAGATGAGGAAGTGTGCGTG CTGCCTCCTCTAGCCTTCTG 89 ND -
C27.442 MSAT (AC)13 CCAAGAACAGCCTAAGCTGG ACACATACACGCCCAATTCA 173 ND -
PFKM GENE Muscle type phospho-fructokinase TCTAACCCTCTTTGGAGTGAGGGTC CAGATGAAGCTGGGGTAGAAGTTGA 229 60 -
LALBA GENE Alpha lactalbumin CAATTTACAAAATGTGAGCTGTCC GTCACAGGAGATGCCACAGAT INT 55 -
REN208N23 MSAT (CA)15 GACTTAGCCACCGCACTTTC GTTCTTGCTGACAAGGGGAG 241 60 0.5
PEZ16 MSAT TETRA REPEAT GCTCTTTGTAAAATGACCTG GTGGGAATCGTCCTAAAACCC 281-317 58 -
REN277O05 MSAT (CA)17 CCTCCTCTCACTTGTCCTGC AAATGGTGTCTTCAGCTCCG 334 60 0.78
REN173L15 MSAT (CA)13 TTTGTACATGTCAGTGTGTGAGTC TAGGGCAGAGAGAGCTTGGA 185 60 0
REN304E24 MSAT (CA)10 ATAGAGGCAACCCATGTCCA GCAAAATACCCTCCAGGTCA 163 60 0.46
LEI002 MSAT (CA)20 CCCAATACAGCAAGACCTCT ACCTACTCTGCACAGAGAAG 130-152 55 -
PTHLH GENE Parathyroid hormone-like peptide AATGCATTGGAATAAAACTGTCTTC AAAAAATAGAGAAATTCAGCAGCAC 182 55 -
REN277K09 MSAT (CA)15 TCAGCAATGGACAGAAACCA TTGGCATCTTGTTAGGGGAG 206 60 0.76
REN65A09 MSAT (CA)11 GACCCAGCTTTATTTGAGGTA TGCAATCATTTTAGTTTGAGA 207 50 0.78
C27.502 MSAT (AC)15 TTTGAAAGGCTGTATGCATCC GTTATGGCCAAGTACTCTTCCA 173 ND -
C27.436 MSAT (TG)4(GT)16 CAGCTGGATTGGGGACTC CATCTTGCTCTCTCAAC 132 55 -
REN125B11 MSAT (CA)18 TGAGCTGGGAGACACTTGACG AAACCACCATCCTCCTCCATC 115 55.1 ND
D04813 MSAT (TG)10TAGTC(TG)4TCTA(TG)7 TGGAGTCAGTAAAGCAGGCTA TGAGTGACTGTGTTCTATCTTGT 122 - 0.50
IAPP GENE Islet amyloid polypeptide (h) amylin TTTAATGCTAATTAAGACCCCATCA CTTAACTTCACTCTCCGCTGTTTAC 264 55 -
REN233K12 MSAT (CA)11 TGCTTACACAACTTGGCACTG CCACAGGGAGTCTGCTTCTC 146 60 0.62
REN296I06 MSAT (CA)14 TGCCTACATCCATCTCTCCC AGAAGCACCCAAGTGTCCAT 317 60 0.62
PEZ18 MSAT TETRA REPEAT GAGAAGATAAAGCAATTCTC AAGTCATTAATCTCTCCTCG 211-272 58 -
FH2346 MSAT (GAAA)>40 AACACGGAGGGAAGAGGTG CAATCAGTGACAGTAAAGGAGGG 450 ND -
C27.671 MSAT (CA)10 AAAATGAAAAAGGAAGAGAGGG AGGAGACAGGATTTTCCTCTCA 151 - -
REN159B08 MSAT (CA)22 imp TGAGTACTCCCTTCCCAACC AGTGGGCCTCCTGATACCTT 243 60 0.70
REN56C20 MSAT (CA)15 TAAAGTGGGCCTCCTGATA GAGTACTCCCTTCCCAACC 249 50.3 0.70
PEZ6 MSAT TETRA REPEAT ATGAGCACTGGGTGTTATAC ACACAATTGCATTGTCAAAC 166-203 58 -
REN260D22 MSAT (CA)11 TTCTCCCACTCACCTTCACC ATGGATAGGAAGATGTGGCG 311 60 0
VWF GENE Von willebrand factor ACACCTTCAGCGAGGCGC GGGTTTCCTGTGACCATGTAGACC 184 60 -
RTB GENE/CSM Rod transducin beta subunit CTGGGACAGCTTCCTCAAAG ATACTCCCCATTTTCCCCAC 213 60 -
TNFR-1 GENE tumor necrosis factor receptor p60 ttcaccctcaagacgattcc gctgcagttattgcactgga 308 60 -
DRPLA GENE/MSAT polymorphic CAG-rich region in Dentatorubropallidoluysian atrophy gene TTCTGCTGGAGGCCAATCCACAGGCC TGCTCTTCCAGGGGGTGAGGATATGC 192-207 60 -
CD4 GENE Cell differentiation antigen 4 TTGAATCTGAAAGAGCAGGCTGC GTGATAGCCAAGAACTTTGGCCAG 182 60 -
CD9 GENE Cell differenciation antigen 9 AATGCTTTATTCAATATTGGTATTT ATGTATCAAATTGTCTTCAACATAA 255 50 -
KCNA5 GENE Delayed rectifier K+ channel CAAGGGGTCCTTGTGCAAGG TCGCCGCAAGTGCACATT 115 60 -
NACL GENE Na/Cl dependent betaine transporter GAGGCTTCTTGAGGTGTCCCTAGTC AAGTCCAGAGGTTGGACCAAAGTG 257 60 -
BGT1/SLC6A12 GENE Betain-GABA transporter GAGGTGTCCCTAGTCCCACA TCTCCTCACCCACAAAGTCC 280 60 -
REN100M16 MSAT (CA)15 TCCCCAAGGCCCAGAAAC CAGCGATGATGAGGAGAAGGT 213 55.6 0.66
REN181L14 MSAT (CA)20 CGCCAGCATGATAAACAATG AGATAACAAGGCTGGGAGCA 177 60 0.7
REN240O14 MSAT (CA)14 GGAGAAAGGGTGAGGAGGAG ACATTCAGGATATGGCGGAG 233 60 0.70
REN265N18 MSAT (CA)13 TTTTCCCCAGCTCTTCACTT CCACACTTTGTCTTGTCCCA 372 60 0.54
REN72K15 MSAT (CA)15 CCGATGCCTGTCCTTTGA ACCTGGCCTCTTCTGTTGTCT 250 53.9 0.66