Map of CFA20

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
REN150K12 MSAT (CA)10 CAAAGAATCAAAGCATCGGC CCCACTTTCACTGCAAGACA 201 60 0
PEZ19 MSAT TETRA REPEAT GACTCATGATGTTGTGTATC TTTGCTCAGTGCTAAGTCTC 186-208 58 -
SEC61A GENE Sec61 homologue AGCAGTCGGGCGTTGTGAG GGGGGGTCTGTTTCCTGGTTAG 210 60 -
RAB7 GENE Rab7 gtp binding protein TCAGCGGAAAGCTGCAGTTG GTGTCAGGGTGAAGTGTTTGGTAGG 178 60 -
SLC6A6 GENE Na/Cl dependent taurine transporter GGAGATGCTTCTCTGAGCCTGC AACCTGCAACTGGAACTGACTCG 190 60 -
AHTH216Ren CSM - CGCCCGATTTTCTTTGTTAG GGCAAAGGAGGACACAGGT 143 - -
OPSIN GENE Opsin CCCTACACCTACCCCAGCCAC GGAGGGGCAGAGATCCCACT 197 60 -
RHO GENE/CSM Rhodopsin ATGGTCTCTGGAGCTAGGCA TTGCTACTGCTGACATTCCG 224 60 -
REN55P21 MSAT SINE TGGACTCATACAGAACACAG CCATACAACAGAATACTACT 258 49.3 0.72
REN119P03 MSAT (CA)19 GGTGAGCCCTAATCCAG TGTTCCATGCCCCTCCTC 202 51.6 0.72
FH2892 MSAT (CA)17 TGTCAAGGGTGGAAAAACTC AAAGTGCCATGATTGGAGAG 211 58 -
C20.610 MSAT (TG)5(TG)4A(TG)11 CCTTTCCACATTACATAGACAG GGAGAGTCTGCTTCAGGATTC 125 55 -
FH2625 MSAT TETRA REPEAT CCTGCTTGAGGATTCTCTTTC ACTGCCCTCTTTTTCTTTCTTT 349 58 -
C01801 MSAT (TG)10(GT)9 TCTGATTTTCACCCTTAGAAC GCAGTTTTCCTGTCTCTCTT 144 - 0.48
REN60C14 MSAT (CA)15 TCTGCCTTATCCTGTGTCTA TTTGTCTAACTTTTGCTCTG 184 48.6 ND
REN175I23 MSAT (CA)18 imp AGCATGAGCAAAGTGGAGTG TCTATCCGGTATGGCACACA 210 60 0.66
REN124F16 MSAT (CA)9 GCCAGCATGAGCAAAGTGG AATATGCTCCATCATTTTATG 239 50.5 0.72
REN96J16 MSAT (CA)13 CCATGACTCAAGGGAACT TGAAGGAGAAAGGCAGAGA 137 50.1 ND
REN130E03 MSAT (CA)13 AAGACAGAAGCCCAAGATA GAAGAGGCTGAGAGTGAAG 169 50.6 0.76
REN76P23 MSAT (CA)18 AGACAGAAGCCCAAGATAG GAAGAGGCTGAGAGTGAAG 178 50.9 0.74
REN159M20 MSAT (CA)15 AT(CA)2 ATGGCCAGAAAGCAAGAAGA TGGCCTGAAGATTGTAAATGA 207 60 0.70
REN100J13 MSAT (CA)15 TGATTGACTCTACTTTACACA TATATTAGGCGGTTTTCTTCT 164 48.4 0.83
REN178E07 MSAT (CA)11 TTGCAAATGGCAAAATTTCA GGATACAACTCAAGTACCCATCC 131 60 0.64
REN153G22 MSAT (CA)4TT(CA)8 TGGAATGAGTTTCTGCAAGG CCGTTCCTCAACCTGAAAAA 181 60 0.50
FH2365 MSAT (GAAA)~60 TTTAATGTGCATATGACTCCCC TTGGTGAAGTGTCTGCCTTC 500 58 -
CPH16 MSAT (AC)17 CTACACCAGTTAGGGAATCTAGC CAGATTCAAATCCACTCTCAGAC 149_169 60 0.75 _ 0.84
FH2148 MSAT (GAAA)~21//(AG)~19 GGCAGAAATGGAGAGTATCAGG GTCCCAGGATGGAGTCCC 480 58 -
REN250B12 MSAT (CA)18 AAGCCCTTGGAATAGTGCCT CATTCACTTCTCCCTCCACC 215 60 0.58
REN149D23 MSAT (CA)11 ATGCTCTCTCCCTCATCCAA TGAGGGGGATGAGTTTTGTC 152 60 0.46
REN316E23 MSAT (CA)20 GCGATGAGTGATACTACCCCC TTGGTTGGTTTTGTGTGCAT 116 60 ND
REN89L24 MSAT (CA)15 ATGAGGGCTGCCACTGTAAAT CCCCTCACCACTCCCTCAA 169 56.1 0.46
REN93E07 MSAT (CA)16 TGAGGGCTGCCACTGTAAATA GGCCCCCTCACCACTCC 169 55.9 0.66
REN75I12 MSAT (CA)9 TTTGGGGTATTTTTGGTTTTG GATGGGCTGGTGTTGGTTCA 210 50.8 0
C20.622 MSAT (TG)13 CTTGTGCAATCATCATCTTGA CCCGAGGTACCTATGGCT 151 55 -
REN193A22 MSAT (CA)13 TCCCATACCTACAAGGCAGG ACCTGAGAAGCTCAAGGCAG 210 60 0.5
PRKCD MSAT/GENE Protein kinase C, delta*/ (CA)21 TGTTGCCTTCACTTGTAAT TTTGGAATGCTTGGAACTAA 143 55 -
APEH GENE Acylamino acid-releasing enzyme GGGCTCTATGTGGGGTATGA TGCCACCTGATTGGTCAGTA 166 60 -
COL7A1 GENE alpha 1 type VII collagen non collagenous domain tttcccggagagtgtgtacc agaccctgaagctgtgtgct 271 60 -
FH2158 MSAT (GAAA)~44 ATGGCCACATCACCCTAGTC CTCTCTCTGCATCTCTCATGAA 274 58 -
DGN14 MSAT (GGAA)24 TCACACAAAGTGGGTAAGATGG GATTATGGTGCTATCCCTCTGG 250 - -
AHTK20 CSM - GTACAGTGGTCACATAGAGG CTCAAAGGCGTTCTTTCCAG 169 ND -
REN249H14 MSAT (CA)15 CCCATCTGGAAGCTTGATGT AAGGGTTAATGCTGGGTGTG 377 60 0.54
OLF4 GENE Olfactory receptor 4 CTTAGCTCCGCTGCTCCC AGGCTTCCCTCTGAAAAATA 140 60 -
REN122G10 MSAT (CA)20 GAATGCATATGCTTACCT ATGGGATAATTAAACTCAT 185 46.6 0.41
ACP5 GENE Acid phosphatase type 5, tartrate-resistant ACTTCCCCAGCCCTTACTACCG GCCGCACAGGTAGGCAGTG 326 60 -
REN249D14 MSAT (CA)16 TCCCCAGTCAGCTTTGTTTT AGTCTGGCGTGCTTTGATTT 176 60 0.42
ICAM GENE Intercellular adhesion molecule-1 ACTGGCAGCGGTGCCATAAT ACAGGTCAGGCTTAGACGTCCATC 224 60 -
REN88D22 MSAT (CA)16 GCCACATGCAGACCAGTAGA TCAGTAGCCAGCACAGAGATG 122 53.6 ND
REN114M19 MSAT (CA)11 AGACCTGTGGTCAGGGAGC CCATACAGCCACACCAAGTG 193 55 0.50
CAPS GENE Calcyphosine TATGCAAGTAGGACAAAGGTTCCGA CAAGTGGTGGGAAGGGTAGGTG 196 60 -
AHTH284Ren CSM - CTCTGAGAACAGGAACAGCAAATTC CTCAGTGAACTCACCCCAAGACATT 243 - -
REN293N22 MSAT (CA)15 AATTACTCGGCCTCTCTGGG AATGACATTGAGCCTGGGAA 206 60 0.48
AHTK209 MSAT (GT)14 AGTGGTAGGTGTTCCAGCCG TCGACCTCTTGAGATAACAA 96 ND -