Map of CFA12

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
EST-CFZ97747 GENE - GCCCCAGACCTCTATTGTCA AAGGAAACGAGGGGTCAAAT 116 - -
FH2200 MSAT (GAAA)50 CATGATCCTGGAGTCCCG GAAAGCTGCTTCAGTGGACC 462 ND -
HLA-A9 GENE/CSM MHC class I DLA-A9/A9 alpha chain AACAACCCTGGCTTGTCTCTGC TCTCCTGGACAGGAAAGCACATC 158 60 -
TNF GENE Tumor necrosis factor TACTCCCAGGTCCTCTTCAAGGG TCAGCGCTGAGTCGATCACC 230 60 -
DLA88 GENE MHC class I DLA-88 CTGATGTGCTTTCCTGTCCA CAGCCTCACATCCCAAGACT 60 60 -
RDBP GENE Radin blood group (HuEST-L03411) GCAGGTCGGATTCATTC CCATCTTTTCATAGGTGACG 177 46 -
HLA-DRB1 GENE MHC class II DLA-DR-beta-1 CCTTTCCAGCTTCTTCTCAGAGTCC AAGGTACTGCAGTCAGCACTGGG 183 60 -
FH2202 MSAT TETRA REPEAT GTTGAGTGGTTGCCTTTAGC CAGGATCTTCATATGTCACC ND ND -
HLA-DQA GENE MHC class II DQA chain GGTTCCTGAGGTGACTGTGTT CCCCAGTGCTCCACTTTG 252 55 -
HLA-DRA GENE MHC class II DLA-DRA ACCCCTGTGGAACTGGGAGAG CATCCAAACCCCAGTGCTCC 232 60 -
CLPS GENE Colipase CTGGGCCTCGGGTTACGTC GACCACCGCAAGGGCAAC 196 60 -
C07003 MSAT (GT)25 GAGCCTGCTTCTGCCTCTCC GTATTAATGGATGGATTGCA 156 59 -
REN258L11 MSAT (CA)14 TTCTCTGTGTATGTGTACGCTTG ACACCAAATGTGTGAAGGCA 280 60 0.72
REN153O12 MSAT (CA)12 CCAACCTTGGGTCACTTTTC GTGTCTTTCCCTGAGCATCC 213 60 0.76
REN242J05 MSAT (CA)15 TCATTTTGGAAGCTATGCCC CTGAGACCACACAGCTTGGA 284 60 0.42
REN113P22 MSAT (CA)9 ACCCACCTGTCAAGATTC GCCGCCATGTCCATTAGTTTT 210 49.8 0
REN211B14 MSAT (CA)12 TGCTTGTGGTGAGGTCAGAG CCAGCGTGCCTACGTAATGT 121 60 0.46
FH2152 MSAT (GAAA)~55 ACCCCTCTTCATGCTCTCTG AGCATATCAGTAGGGAAGGGAG 433 58 -
RDS GENE Retinal degeneration slow GGTGTGTCCAACCCTGAAGACC TGGTTACTCTTGCCCAACTTTTTCA 119 60 -
REN170E21 MSAT (CA)13 CG(CA)3 GCAGCAATTAGCCACAATAGC CCCTACCCCTTAAATTCCAA 284 60 0.59
REN262I12 MSAT (CA)24 GACAGGGCTCTCTGACAAGG CTTCACTGCTCCAGAGGACC 157 60 0.48
REN262L10 MSAT (CA)24 CTTCACTGCTCCAGAGGACC AATGGCAGAGCTGGGATATG 359 60 ND
REN213F01 MSAT (CA)13 CATTCTGGGCAGGTTTCATT GGGGACAAATTTCCACTCCT 265 60 0.82
PAFAH GENE Plasma paf acetylhydrolase TAGGCTATCCCATAAAAGTGATTGA ATTAGCCTTGTGCCTGTTATACTTG 180 55 -
REN194P02 MSAT (CA)14 TCTAGGCAATGCAAAAAGGC ATTCAGCTGTTGAAGGGCAT 363 60 0.66
C05101 MSAT (AC)15 CTCTTAACCGACCTTGACACC AGAACTTGCTTATGAAGTCATGT 208 58 -
FH2054 MSAT (GATA)~16 GCCTTATTCATTGCAGTTAGGG ATGCTGAGTTTTGAACTTTCCC 151 58 -
FH2401 MSAT TETRA REPEAT CTGATTCTGCCCATTGGG ATGTAAGCTCTACTGGGGTACTGG 220 ND -
EST-CFZ97782 GENE - TTgATTTCTgATgCACAACCA TCATgCTTggAgACCAgTTg 257 - -
REN132B08 MSAT (CA)9 AGCACAACCATTACTACTAC ATTTCTACATCTGTTTTTATC 259 45.5 0.46
REN207J23 MSAT (CA)? AAGGAAAACAAGGCGCAAG CATGACCTGAGTCGAAATCAA 407 60 0.58
G01811 MSAT (CT)16TT(CT)3 TATGAGTTGGGCTCCTGGTC CTGGGACAGTAACACACATTAGT 197 - 0.62
REN238J01 MSAT (CA)10imparfait AGTTCCTGGAGGTCAGGGAT TTTTCATGCAATAAAGGACCC 215 60 0
REN160J15 MSAT (CA)16 CATGGTAACTGCACTTGTGG GGCAAATGCATGATGAAATG 253 60 0.46
REN89A22 MSAT (CA)14 CACAGAACTTAAAAACACATT AAACACAACCCCACACG 231 48.5 0.58
REN208M20 MSAT (CA)9 TGCATCATTTGTGGGTGTTT ATGGAGCATGGGTGAGAAAT 318 60 0.64
C00104 MSAT (GT)9 TGACATAAGCTGTGAGAAGAC ATTGAAACTGATAGAGAAGAG 140 - 0.50
REN148F07 MSAT (CA)9TA(CA)3 GGCCTGCTAGCCCTATGTTA AACCCCATGACATTTGCATC 171 60 0.38
REN45E22 MSAT (CA) 9 AAATAAAATGTTGACCACTAA AGCCCTTCTGTAGTTGTATC 159 45.9 0
PEZ5 MSAT TETRA REPEAT GCTATCTTGTTTCCCACAGC TCACTGTATACAACATTGTC 096-121 55 -
REN157F07.1 MSAT (CA)19 TGAGCGAGAGGGAGAGAGAG TCCTTGCAGCTTGCACTCTA 218 60 0.74
FH2347 MSAT (GAAA)~82 TTAGCTCTTCTGATCTGTCCCC TCTCTTTCCCACCCCTCC 405 ND -
REN260I06 MSAT (CA)15 CACCCTCCACACCTCAATCT TGGACATTGGGGATGGTAAT 258 60 0.66
AHTH127 CSM - ATCGACTTGTTCTTTGTCTCAGC TTTGGATATGATGGGGAATTTA 178 - -
REN194D11 MSAT (CA)12 CAACGACGGGTTTTAGCATT GACGGAGAGGGGATATGGTT 163 60 0.34
REN234K01 MSAT (CA)imparfait GGGAGACGCTTCCCAGTTAT AGCCCCTCACTGGGTGTAG 141 60 0
REN94K11 MSAT (CA)12N4(CA)6 ATACCACTGTCCCTCCTCTTA ATCCTGGTATCAAATCTATCA 123 48 0.56
TBP GENE TATA box binding protein CCTTTCTCTTCTGGAGGAAC CTGCTGGGATGTCGACTG 140 58 -
C12.406 MSAT (AC)12 CTCAGGTCATGGGATCGAGT GGCTGATTCTTTTATTTGCCC 168 55 -