Map of CFA11

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
REN164B05 MSAT (CA)20 TGGGATGTGTGTCATGTGTG CCTATGCAGGGTAGGCACAT 232 60 0.50
PROP1 GENE/CSM Prophet of pituitary 1 unpublished sequence unpublished sequence - - -
AHT137 MSAT (AC)24 TACAGAGCTCTTAACTGGGTCC CCTTGCAAAGTGTCATTGCT 133-153 52 -
CANX GENE Calnexin TGAATGAACTGTAAGCACATCATGC TGCAGTCAACTCTCAGCCAACC 155 60 -
AHTH279 MSAT/CSM (GT)19 GCACATGCTCCATTAACCCC CACTATCTCCTGGCCTCTTCC 184 - -
REN161P13 MSAT (CA)14 CTGCTTGGGATtCTCTCCCT GGGGCTTTGCATTTAAACAA 194 60 0.48
REN181F15 MSAT (CA)10 GAGAGGAGAACGTGCCTGTC TTGATGTGGGTCATGGAGAA 366 60 0.54
REN207M19 MSAT (CA)11 GCAACCTCCCAAACCACTAA CCTTGCCAATGCTGGTTATT 246 60 0.56
C02712 MSAT (GT)22 GCTTGGATGCTATTGGCTCAA CAATGACTTGGGAAACTACATTC 156 - -
REN142o09 MSAT (CA)9imp CAAACCTCAGGACTGGATGG TCGCtGACTCATAAACGTGG 264 60 0.32
REN89J24 MSAT (CA)18 GCCAAGCCAAGATTCAAACT ACACCCATCACTACCACCTCT 186 53.9 ND
REN54C20 MSAT (CA) 9 ATATCTACCCTCTTCATCACA CCCATTCAACTTGCCTAAAA 221 46.3 0
REN242K04 MSAT (CA)11 CAAGGGAAGGTCTGATTCCA CCCTGGGGAATAGGTAGGAA 322 60 0.58
REN296A21 MSAT (CA)12 GTGTGTGCAAAACTGATGGG ACTGACCCAGACTGACCAGG 187 60 0.34
REN275M05 MSAT (CA)11 CAAGGGAAGGTCTGATTCCA CCCTGGGGAATAGGTAGGAA 322 60 0.54
REN286P10 MSAT (CA)10 CACCCAGAGGTCTGCTTCTC ACAGACAAAATGCCCAGAGG 195 60 0.32
REN93F10 MSAT (CA)9 TCTGACGTCCACCCCATCC GAAGCAGCCAGAGCATCCT 227 54.5 0
FH2096 MSAT (GAAT)9.5 CCGTCTAAGAGCCTCCCAG GACAAGGTTTCCTGGTTCCA 104 ND -
REN57H24 MSAT (CA)12 AATTTTAGCCTGCTCTTGACC TATATTGTACACCTGAAACTA 237 47.9 ND
FH2004 MSAT (GAAA)13 CTAAGTGGGGAGCCTCCTCT ACTGTGACCTACTGAGGTTGCA 191 58 -
FH2319 MSAT (GAAA)~50 GGAACACTGTATCCTCAGTGTCC TGGGAAGGAAGGAAGTGTTG 255 58 -
REN245N06 MSAT (CA)18 TCCTCCCTGGAAAGGAAGAT GGCAGGAAGGCAGACTGTAG 175 60 0.70
IFNA3 GENE Interferon-alpha subtype 3 CAAACGCCCAGTGTCAGGG TGTCTCCTTGTGGCTCTTTCCC 198 60 -
IFNW1 GENE Interferon omega CAAATACAAAAGAAAAGGCAACAAT GCTCAGGCTATACCAAGATGATTAA 224 55 -
REN161D14 MSAT (CA)22 GCTTTGGCTCCTTCATTTTG TTGTCCCCATAGTACAGGCAG 375 60 0.72
REN105L03 MSAT (CA)26 GGAATCAAAAGCTGGCTCTCT GAGATTGCTGCCCTTTTTACC 251 55 0.85
FH2982 MSAT (GAAA)42 CATGACATTCTTGCTTTAGCC GGGCAAAGGGTTTTCTAAGG 361 58 -
IFNA2 GENE Interferon-alpha subtype 2 ATGACAAGCACGCCCATGTAGTT GGCAAGTGTGGGAACCGC 192 60 -
IFNA1 GENE Interferon-alpha subtype 1 ATGGAGAAAGTGCATAAGGGAAAGC CATCGGGGATCCTGCAGG 185 60 -
REN174P22 MSAT (CA)11 CACTCATGCTTCAGCAAAACA TGAAAGAGGACAATGCTCCC 273 60 0.42
C11.868 MSAT (CA)N AGTAGAGCACAGGGAGAC AAGAGTATTTTCTTCCATATCC 209 55 -
REN113M02 MSAT (CA)15 AAGGTAAGAGGGCAGATTTTG AGATGCTACAGCCTCCCTCAG 232 53.2 0
REN194N17 MSAT (CA)15 GGTGGAGAAACTTGATGGGA CCCCATGGAGACCATTCTTA 271 60 0.7
FH2019 MSAT (GAAT)7(AAAT)6 ACCCCCCTGATTTGCTTTAC AGTCCCGGAATCGAGTCC 198 58 -
REN253B05 MSAT (CA)16 GAGGCTCCTTCTCCCACAG CAGCAACCAGAAAGGGTTTG 340 60 0.5
REN277K01 MSAT (CA)17 ATCGCTCTGCTCATCCAGTT TGCACTGTGCTCATTTAGCC 148 60 ND
REN147O02 MSAT (CA)9 CTCCTGTTTTCCGTGGTGTT CCCTCCGAGCAAGTAGCATA 241 60 0.74
REN249L05 MSAT (CA)12 ATGCTGAAGTCGTGCAGTTG CAGAAGGAGGTCAAAGCCAG 322 60 0.42
REN182P10 MSAT (CA)13(CT)18 TCCTTGAAATCAGCCTGAGC GCACTTGCCTGGGATTAGAC 344 60 0.18
C11.873 MSAT (CA)N CTGGCAGATTACAGGTAGC GTTCTCCAAAGCACTCAT 133 58 -
DTRCN4 MSAT (GGAT)5(GGAA)13 CCTCATTgAgTgTgAggATT ATTCATTTCATgTgTTgggT 343 - 0.67
REN174D18 MSAT (CAA)6 GTGAGTGGATGCATCTGGGT AAGGCAGCAGTGATGGTTTT 204 60 ND
LEI001 MSAT (CA)20 ACAATGCCTCCAGTGTAAGG GATCACGTGCTTATGTGCTG 120-135 ND -
AHTH155Ren CSM - CTGCACACCTACCCCAGAAT CACGCACGTGCTTAAACATT 123 - -
DGN13 MSAT (GAAA)25 GGAACCCTCAGCTGTTATATGC GATCTAAGGGCTCCAGAACACC 320 - -