Map of CFA09

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
SRP68 GENE Srp68 sb signal recognition particle CCAGGTCTGCATTGGCCC ACGACAAAGTTCCGAGCTCCC 247 60 -
GALK1 GENE/MSAT Galactokinase 1*/ (CA)18 AATTGAGTTTTTGGGGTGCCTGAG CAATGAGCTGAGATGGTGTAGTAG 186 64 -
REN198P23 MSAT (CA)9 TTGTACATTATCTGTTCTACCTCGG TCTTCAGCAGGCCTTTTCTC 132 60 0.66
C09.173 MSAT (TG)17 ATCCAGGTCTGGAATACCCC TCCTTTGAATTAGCACTTGGC 110 58 -
APOH GENE Apolipoprotein H (beta-2-glycoprotein I) ATGCATCAGATGTAAAGCCATG ATTTTTCCACCTTTCTTTATGTTCC 104 55 -
FH2263 MSAT (GAAA)16perfect CATGTAGAGTGATTAGTTGGTCTTT CTGAATATCCTCTGCCCTTC 217 ND -
GH GENE growth hormone gCAgTTTCTCAgCAgggTCT gATgCCCAgCAACTAgAAgg 334 - -
DDX5 GENE ddx 5 exon 2to5 p68 rna helicase aggcctgctgactgcatatt ggggagtgagtgctctgaac 205 - -
ACP1 GENE/MSAT (TG)n in angiotensin I converting enzyme AGGTCACTGTCTGTACACGTAGTG ACCCCCTGTGCACCTCATCACTTA 84-100 60 -
C03304 MSAT (AC)16 ATTGGCATCATTCCACTGGTCA TGGAGGCAGCTTAAATCTCAACA 95 58 -
MYL1 GENE atrial myosin light chain homolog gene ctcttcctcttcccctgctt acaacccaggatgtcagagg - - -
RAB5C GENE Rab5c-ras related gtp-binding protein TAAGTGCCTCTTCACACAGCGC CAGCTGGTCCATTGGGTCG 111 60 -
BRCA1 GENE Breast cancer 1, early onset GAGTCCTAGCCCTTTCACCCATAC GTGATGTTCCTGAGATGCCTTTG ND ND -
REN54L20 MSAT (CA)18 CAGTAGGCTTCGTTTTGAGTG AAGGGCCCATGTTGCTGAGA 153 54 0.66
REN144L19 MSAT (CA)13 TGTCATCCTGCATCCAATGT CAATTTACTTTTGGGCGTCA 216 60 0.59
REN75M10 MSAT (CA)21 GCTGGGGCCTCCTCTTCTTC GGCCCCACCTCCCCAATAC 215 57.6 0.74
KRT9 GENE/MSAT (GT)20 in Keratin 9 gene (KRT9) TCATCACTTCCTGCTCCATT TCTCATGCCACACGGAACCT 320 53.1 0.67
KRT17 GENE keratin 17 CTCAggggAATggAAACAgA gAgCTggAggAggTgAACTg - 60 -
ZUBECA3 MSAT CATA(CA)13TA(CA)3GG(CA)2 TCAGGCCTTTGATGATTTCA CAGGGCTGGCATTTATGTAAG 200 ND 0.09
GAS GENE Preprogastrin CGCCTGCTCTGAAGCTTCTTG GGCCGAAGTCCATCCATCC INT 60 -
THRA1 GENE/MSAT Thyroid hormone receptor, alpha 1*/ (CA)23 AGCAGCTCCCCTTCACAC CCCGCCGGTTCCCCCACTAT 180 55 -
RARA GENE/MSAT Retinoic acid receptor, alpha*/ (CA)23 CAGGGCAGGGCGGGTCAT GAAGATCTGAAGAACTTAGAGGAG 130 63 -
D29228 GENE HUMNK277 (HuEST) GAATGTCTGAGAGGCTGCT CACTTTTGTGTCCCAAGGTAA 164 50 -
G06401 MSAT (GA)10 TGCTTCTCCTCTGTCTGTATCTC CAGGTCCCCCTACACTAAGTG 133 - 0.64
REN206J15 MSAT (CA)12 CCCCCAACAATCAAATGTTTA AATGCAGCTATATGGGCCAC 227 60 0.32
REN124K12 MSAT (CA)11 CCCCCAACAATCAAATG GTTAAACAGCGAGTAGC 115 46.7 0.32
GNGT2 GENE transducin g subunit gtccaatcctgtggtcatcc ttgtgttgccactcttctcg 158 60 -
COL1A1 GENE type I collagen pre-pro-alpha1 chain CACCTCAggAgAAggCTCAC ATgTTCTCgATCTgCTggCT 132 - -
REN126A15 MSAT (CA)11 CTACAGGGCAGTTCCACTCTT AAAGGGATTCAGGGAGGTTTG 264 52.9 0.70
REN158J11 MSAT (CA)12 TTCTTGCATGATTGCAGAGG GGGTTTTATCCCGGTTCATT 263 60 0.54
FH2248 MSAT (GAAA)~21 CAAGAAAAAGATCAAAGCAAACA CCCAGTGTTGAACCACCTCT 390 ND -
FH2186 MSAT (GAAA)~50 AGAGGGTCTACATGGATTCTGG TAGAGTCTCAAACAATCCTGTGG 358 58 -
REN217P11 MSAT (CA)8(CT)11 CAGGCTCTTGAAAAACAGGC GGCACCACTGAACCACTTTT 304 60 0.42
REN65C02 MSAT (CA)13 TTCTTTTTATTTACCTACCC ACACTTCATTATTCCTCAGC 146 48 0.66
FH2846 MSAT (CA)17 CATCAGCCCTCATGTAAAGC GGCCTTCATCTCCACACAC 200 58 -
C09.474 MSAT (GT)12 TTAAGCCTTATTTTGTGTTGGG TCCAGGAAGTGTCTGCCAGG 173 ND -
REN145P07 MSAT (CA)21 TGGAAAGGTTTGCACTCTGA TCCAATTCTTTCTGGGATGC 218 60 0.66
REN42F01 MSAT (CA)15 CCAGTGCCAGGGAGAGTTT GGGACATGCCTGCTGAC 274 52.2 0.34
CRYB GENE Beta-A3/A1 crystallin CTCAGGTTGTAGGGTACTGACCCCT CTCCTCCATGATGGTCACATTCC 140 60 -
ALDOC GENE Aldolase C, fructose biphosphate GTGGCGTTGTGTGCTGAAAATC AAAGCCCTCCTAACCCTCTCCC 171 60 -
NF1 GENE/MSAT Neurofibromin 1*/ (CA)19 TCCCAAGTGACGGTTAGAGC CCAGTGCCAGGGAGAGTTT 304 63 -
REN278L10 MSAT (CA)16 ACTGTGGGGAGAGGACACAC CCTCTAGACAAGAGCCACGG 235 60 0.80
REN256F13 MSAT (CA)19 ACCCTGGTATCCCTCAAACC TTGACTTCTGGCTTTTGGCT 181 60 0.48
DTMT GENE Olfactory receptor AGCCTGAGGAATAAAGACATGAAG TGGGTAAGAGAAAACATCTGGAATA 159 55 -
LEI.2D2 MSAT/CSM (GAAA)9 CGAGACCACATTGGGCTCC CCAGACGCTCTCCATGCCTC 390 - -
REN177B24 MSAT (CA)11/ (CA)11 GAGGAGCAGGTGAGGCATAG GCTGCTCTCGATCAACACAC 366 60 0.74
REN114M08 MSAT (CA)8(CA)5 CATCATGGCAAGAAGGGTAAA ATGTGGGGATGGGTGGACT 164 54.9 0
REN73K24 MSAT (CA)13 AATAAAAGCAATCTCAACTC TCGGCACACTACCTGGCAGTC 203 49.2 0.58
TSC1 GENE Tuberous sclerosis 1 GTGCACAGGCTACACTTGGGT GAACCCTGAAAAATTCCACCA ND ND -
FORS GENE Forssman synthetase CCTTCAACCCTGAGCTTCTG ACCCTGCATGAAGAACTGCT 143 60 -
E04008 MSAT (CT)12(GT)5 GGTAGCCTGCTTCTCCCTCTG ACCAGTGATTCCCTTCACCTG 143 - 0
GCSIG GENE DNA sequence with GC signal CCATGCTTGTTCAGCCGTTG ATGCTCTTCCCCTTCCCCTG ND ND -
EST-CFZ97756 GENE - TTCCTCCTACCTTCCC TCCGAGGAATAGAGGG 275 - -
AHTH183Ren CSM - TTATCAGGTGAGTCCAGTGTCATCA TTTCTGATCCTTCAAGCCATAAGGT 252 - -
REN287G01 MSAT (CA)19 CCCATAAGGACCACAGGTTTT TTCCTAAGGCCCTCCTGATT 187 60 0.54
GGTA1 GENE Alpha-1,3 galactosyl transferase GAAGAGGTGGCAAGACATCAG TGGTAATAAAAATCCCCCTGG 258 55 -