Map of CFA07

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
AHTH289Ren CSM - GGGACCTGGTAGGCTGAACT ATGAGCATGATGGTGTTCCA 153 - -
RPL17-L23 GENE Ribosomal protein, L17/L23 ACAgACTTCCTgCTgCTggT CACACCATCTTTTCTCCggT 140 - -
REN97M11 MSAT (CA)16 TGAGGCTCCGTGGGTATGTG AGGCCAAGGGAATGATGCTC 195 57 ND
REN211A02 MSAT (CA)17 GGTTGCAAACCACTGGAAGT TAAAGATGCCCAACCCAGAC 205 60 ND
IL10 GENE Interleukin-10 GGTTACCTGGGTTGCCAAG GCCTCAGCCTGAGGGTCTT 145 55 -
FH2226 MSAT (GAAA)~22 GGACTACCCCATTGCATTTG GAATCGAGTCCCATATCGGG 205 ND -
REN314O07 MSAT (CA)11 GAGGCTCACAAAATGTCCGT GAATCCAGGGTGTCCAGGTA 191 60 ND
CPH20 MSAT (GT)13 GGTTCCTGGGCCCAATTTCA TGGTGTGGTGAATCGCTTGTTG 98 59 0.42
CD34 GENE Cell differentiation antigen 34 TGAGGCTCAGGGAAAGGCC GTGTGCAGCAGGAAAGGCTAGAA 239 60 -
VIASD10 MSAT (CATA)14 CACCACAATCTCTCTCATAAATAC GGCTGTCACTTTTCCCTTTC 119 55 -
REN319J07 MSAT (CA)12imparfait GAGAGGGTGGCAATGAAAAA ACGGCTTCCCTAACCATTCT 232 60 ND
REN300M13 MSAT (CA)11 CCATTTAAAGAGGCTTGGGG CGGCAGCTTTCCTTTCTTTA 270 60 0.50
REN200G14 MSAT (CA)15 AGCTTTCCAACCCATTCCTT TTCTGAAATTCAAGCCAGCA 352 60 0.58
PDC GENE Phosducin - - - - -
REN304I05 MSAT (CA)10 GCATGAGTGTGCATGCTTTT AATCTCCACTCCCACCATCA 363 60 0.50
REN162C04 MSAT (CA)18 TTCCCTTTGCTTTAGTAGGTTTTG TGGCTGTATTCTTTGGCACA 203 60 0.66
E04402 MSAT (TC)13 TGAATCATTATGGTCCTATCGTTC TAAAATGCAAGTCTTACCAGAGGAA 111 - 0
REN99O20 MSAT (CA)12 GAGCGAAGGTAACAATCCA TACCCTCTATATCCCTTCACG 188 50.2 0.58
C07.620 MSAT (AC)18 AGCAGAGAGGGATTGCAGG CAGGGAAAAATAGCAAAGAAAA 209 58 -
SELE GENE E-selectin GGAACACCGTACCTCCAGGAACTAG CGTTGAACTCCTCATGGGGG 216 60 -
REN04J02 MSAT (TGT)10 AGGAAGGTACACAATCAAGT AGATGGAGCAGGCAAAGGTG 511 52 ND
SELP GENE Cell adhesion molecule CTGCTGGTCTCCTCACTCAAC ACAAGTATTACCAGAAAACTGCAGC 112 55 -
REN69B24 MSAT (CA)18 TGTAGGGCAGTGAATAAAAG GCCTGGCTCAAGCTCACAAGT 238 50.4 0.42
REN120L12 MSAT (CA)12 GGGTGGGTATTTGTCTTTTCT CCCGGTGGTCATAGCAG 171 52.2 0.50
REN286L19 MSAT (CA)9 CAGTAATGTTTTGTGGCCTCTG GGGAGTGGGGGAAATAAATG 214 60 0.66
REN185D01 MSAT (CA)1TA(CT)17 imp CACATAGGACCTGGTGGTGA CATGCTTGTCTGGCTGGATA 235 60 ND
LEI.1B10 MSAT/CSM (GT)18 TTGTCTTTAGACTCAATAGTAGC CCCAACGATCCGTTCTTTGAC 119 - -
FH2174 MSAT (GAAA)~16 CACCTGTTCTCATAGAATGCAG AAGTCTCGCCTCGGGGTC 201 58 -
REN286O18 MSAT (CA)14 CTGGATGTCAATGCAGGTGT CTGTTGTCACAGGAGGCAGA 306 60 0.65
REN116E14 MSAT (CA)5CT(CA)4 GCAATGCAAGCCACAGA AAGGAGGGAAAGTTGAAATC 239 52.2 0
REN109O15 MSAT (CA)9 GCAATGCAAGCCACAGA AAGGAGGGAAAGTTGAAATC 238 52.2 0
REN149P06 MSAT (CA)16 TGCAAAATTGTTCCACTGCT TAGCGTGCCCTTCTAACCAT 265 60 0.66
REN97N23 MSAT (CA)18 CATGTAGCCTTTGGATTTGA CTCTGCTGGTGGATTTCTCTA 232 51.6 0.56
DSG-1 GENE desmoglein-1 tgtaggttctcctgctggct ccaagagggatcaggttcaa 153 - -
FH2201 MSAT (GAAA)~24 ATCAACAATGCATGCCACAT GAGAACAAATAAATGCAAGCCC 154 58 -
C09703 MSAT (CA)16 GCTTCAGGAATCTAGGGACAA TGTATTTCCTATGCAATATACC 152 58 -
REN128D24 MSAT (CA)10 GAGGATGGGGCTCAAGT AAAAGGGGGAAATAGTAGA 237 49.1 0.58
REN244L05 MSAT (CA)16 AGCATGGGTGGCTGATAAAC TTTGAGGCCCATTCAAAGTC 273 60 0.48
REN205D19 MSAT (CA)5TA(CA)16 AGCATGGGTGGCTGATAAAC TTTGAGGCCCATTCAAAGTC 273 60 ND
FH2581 MSAT TETRA Repeat ACACTGGGTTGAGTGGTGG CCAGGGGCTAATATCCCTCT 358 58 -
REN143L20 MSAT (CA)6TA(CA)13 GGCTTCTGTTATCTGCTGGG TGAGGGCTGGAGTCTGTTCT 266 60 0.78
C01207 MSAT (GT)15 AGACCACTCTGCTCCCTCTT TGCCTTGAAATGAACAATGA 84 - 0.22
REN193B22 MSAT (CA)6 CCAGCTCTGACCCTCATTCA TTGATGCTTTTAGGAGCCCA 172 60 0.58
REN211K15 MSAT (CA)18 imp GGGGACTGCATTTCTCACAG CCCTGGGAGTACCTTTCCA 258 60 0.48
C07.767 MSAT (AC)15.5 GGGGTCCTGGAATCAAATCT AGCCATTCTGACTAATGTTTGG 149 ND -
RAB12 GENE Rab12 related-gtp binding protein GATGCCTCTGGATATTTTAAGGAAT AATTAACAGCATCGAACGTGTG 117 55 -
REN02D20 MSAT (CA)15 GCCATCATTAACCTCATTT GGGTGCTTGGGCTGGGTGAT 105 54 0.62
REN119H22 MSAT (CA)24 GCTCACAAAGCTGAACTAAATTTGT GTGGGAGGATCGAGTCCC 222 55 ND
TYMS GENE thymidylate synthase agctataccagaggtcaggagacat tgacttctctgcagtcagtctttc 193 60 -
DLAC1 GENE MHC class I C1pg-26 processed CCGAGAACCTTCGAAAGAAA atcaacaatgcatgccacat 133 60 -
REN185B22 MSAT (CA)16 GCAACAGAGCACTTCATCCA CCCTTCCTTAAACCAAAGCC 343 60 ND
FH2973 MSAT (GAAA)17 TCTGGCCCATTTTCTAATTG CCAAAAACCACTGAAATGTG 244 58 -
AHTH71Ren CSM - CAGGGCAGTGTCCCTAGAAG GGGTGGTGGACAAAGTCATT 159 - -