Map of CFA04

Marker Name Marker Type Repeat/Gene Name Forward Primer Reverse Primer BP-Size Run T PIC
CHRM3 GENE Muscarinic acetylcholine receptor III GGTCTGTGACCTGTGGCTCT AAAGAGATGACCCATGCCAG 174 60 -
REN298N18 MSAT (CA)16 AAAACATTTCCCTCCCATCC ACACCCAAAGCTGCAGAGAT 190 60 0.76
REN303C04 MSAT (CA)18 GAGAGGTCATTGAGCAAGGC ACTGCTCTGGCTGTCGTTTT 380 60 0.50
EST-CFZ97754 GENE - CGTGTCCTCCTTAATGCTCA AAAAACAAACAGGAAGACAACCA 110 - -
AGD - - - - - - -
REN71L22 MSAT (CA)15 CTTGGGGTCACCTGCTGTTCA CCCCTTTGCTGGCTGCTTGTG 118 55.8 ND
REN207M20 MSAT (CA)17 GCAGGCAATCCAGAAATGAT AGAGGAGTAGGATTTGGCCC 369 60 0.58
REN171H02 MSAT (CA)16 TGTCCTCATATGAACGCAGG GGTCAACACATTGGAGAGGTG 281 60 0.62
AHT120 MSAT (AC)14 CCCACAATAGGAAAACACAC TGAACTCGGTAGGCATTTGA 74-78 59 -
FH2399 MSAT TETRA Repeat TTCTCCCTCTGCTGGTGTCT GGGGTACATAGTATCCAGCATG 257 58 -
VIP36 GENE Vesicular integral-membrane protein AGGCTGCAGGGCTAGGGAATAG ATCACTGCTCACATCGTCAGGC 194 60 -
REN315G05 MSAT (CA)15 TGTAACCACACTTGGGCATC CATTTTGATTTGCCAAGGCT 188 60 0.53
ATP7B GENE/CSM pseudogene ATP7B unpublished sequence unpublished sequence - - -
FH2412 MSAT TETRA Repeat GCTGGGGATTTATTCTGACC AAATTAACCAAATGTTTGCAACA 160 58 -
FH2097 MSAT (GAAA)~16 CAATGTCGAATTCCATGGTG ATGGAGCAAGATGTGTTTGTG 288 58 -
GHR GENE growth hormon receptor precursor agatctcctcaaggaaggaaaatta aaggatgttaagtgatttctcatgg 199 60 -
PTGER4 GENE prostaglandin E2 receptor EP4 subtype atattttctactttcctccccact actcctatggcatctgtgatactt - 60 -
PEZ17 MSAT TETRA Repeat CTAAGGGACTGAACTTCTCC GTGGAACCTGCTTAAGATTC 199-227 58 -
REN144A06 MSAT (CA)19 CCATTGCAAATGGCAAGATT GAAATTGGCCACAGTTCCAT 158 60 ND
REN160J02 MSAT (CA)22imp ACCGTGCACAAGTCAGTCAG AAGCTGAGCCATTCTTTTCC 248 60 0.82
REN167B18 MSAT (CA)10 CAGCCCTCTAACCCATTTCA GATGCAAATTGATGTCTGCG 257 60 0.32
REN79O09 MSAT (CA)15 TGTTACACTCTTGGGTTGGT GGGGGTGGCTAGAAATACA 155 50.8 0.78
PDEA CSM PDEA ACTTAAGTGACTGGGCCACC CCCTCAGCTCTGCTGTCTTT 110 - -
FST GENE Follistatin GTCTGTGCCAGTGACAATGC AAGATCCAGAGTGCTTTACTTCCA 228 55 -
REN207K23 MSAT (CA)7TA(CA)5 GATGCCCTGTATGCCTGAGT TCCCATGATGCAGAAATTGA 253 60 0
REN156O17 MSAT (CA)16 GGACAGATGGGCTTGGACTA CTGGGGACTTCTGCCTTTTT 262 60 0.46
REN195B08 MSAT (CA)13 GCTTTCCCATTGTGTCCTCA TGATTGATGCCCTTTCAACA 136 60 0.54
REN282C02 MSAT (CA)13 TGAGATATGCTCCCCAAGAGA CACCTTGCTCAAGGCACAT 201 60 0.76
FH2142 MSAT (GAAA)~23 GCTCACATGTGTGCATGC GCACTCCATGAGGCAGGT 294 58 -
REN74B13 MSAT (CA)18 AGAGACCACAGCAATAGAGT TAGCATAACACAGGGTAGG 223 50.2 0.64
C01305 MSAT (GT)9 GCATGAGATAAGACACCACCTGTT TTCATTTCCTGCCTCCTGTG 136 - 0
AHTH1.37Ren CSM - ACTGCCCAGAGGAAGGAGAG TGGTACATTTAGGGGCAACA 202 - -
REN73D12 MSAT (CA)15 AGTATGTGGCTTTCTCTGC TTTCTTCTCCACACCCATAAT 250 49.8 0.46
REN89J09 MSAT (CA)15 AGAGTTTAAAAAGCACAGTAG ACACATTTCCCTCCCATCT 214 46.3 0.34
REN126G20 MSAT (CA)6TA(CA)5CGTA(CA)4 TAGGGTATGCACTTGTTTTG CCAGGGGGTATCCATCT 180 49.8 0
AHT103 MSAT (TG)17 GGAAACTCAGTTATTTTACA GCCCTAGAACTTCACACACA 76-84 55 -
REN204J06 MSAT (CA)13 TAAACTCATGGTCCTGCGTG GTTCAAAGGGGAGAAGGAGG 339 60 0
UBA52 GENE ubiquitin-ribosomal protein L40 fusionprotein ACAgCTAgAAgATggCCgAA CAAAggAAgAgCTggTggAg 281 - -
FH2472 MSAT TETRA Repeat ATTGTCTGTTAACCAAACCTGC AGTCCTTCGAGTGAGTGAGGT 312 58 -
REN230K22 MSAT (CA)15 GAGTCCCTTCGTGCATTCAT TTCTCCAGAGGGAAAATAGTTGA 197 60 ND
REN211H18 MSAT (CA)17 TTCAGGAGGTGGATGATGGT AAAAACCTATGAATTGCCATCTG 269 60 0.66
AHTH142Ren CSM - CATTGGGGTAAAAGCTGCAT TTTGATGGGGACAGAGCTTC 163 - -
FH2457 MSAT TETRA Repeat AACCTGGTACTTTGAATTTGCA TTTGGTCAACATACCTCTCTGG 360 58 -
REN262N08 MSAT (CA)14 AGGATTTTGTGGTGATTGGG TTGCAGCCTATTGTGGACTTT 136 60 0.72
REN215C13 MSAT (CA)15 AACCATGGCCATTTCTGAAG AAAGACTGCTTATCACAGCCC 293 60 0.54
REN59H07 MSAT (CA)15 AGGCACTTATCGCTCTCAT TTGTTTTTCCATCATTTTT 179 47.8 0.66
PEZ13 MSAT TETRA Repeat AGTCTGGTGATTTAATTCGG GTCTAGTCCCCAGTCTAGTTCACTGCCC 170-234 55 -
EST-CFZ97750 GENE - CACAACACATCCCCACAGAG AGATGTCAGCTAGAGGGCCA 297 - -
G07704 MSAT (TC)24 AGCCTGCCTCTCCCTCTCCA AGAGTCACAATGCAACCCCACAA 246 - 0.50
ADRAB1 GENE Rdc5-g protein coupled receptor GTACTGTCGCGTGTACATCGTCG CAGCACAAGATGAACATACCGACC 255 60 -
EST-CFZ97828 GENE - CTgTggTCTgggAgCAAAgT CCCTCTgCTTggTCATgTCT 142 - -